RNA id: AMCG00016715


Basic Information

Item Value
RNA id AMCG00016715
length 2944
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00016715
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28215680 ~ 28221102 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAAAGCAGAAATCTGTAACTGTACTAACAGTACAGTGGCAGCTATCAGTCCTATAGACATCTCAAATAACCTGCAACTTACTTAGTTTGGAAAACAGTAATGGCACCTTTGAGTCCAAAACACTGTCTTCTTTTTGGGTGCTTTTGTTTCATCATGGTGAACTTATCAACCTGCACAGATTTTAGGCAGAGACCTCGGTACCTTGGGGTACGCAGTGGAAGCAAAATCATCCTCTTCTGCTTCACGACTAGAAATAACAACGTGACCCACAAGGTGGAATGGGTCAAAATTTTGCAGCATGGTGAAAAAGAAGAGATGCCGGTTTTTGAGAACAGGAAAGTAAAATTGCAAGCCTTTTCCAAGGAGAACAGAGCTTCACTTACCATATCTGGAGTCACACATGAAGACAGTGGGATCTACGTCTGCAAAGTCAATAACTTGGAAGGGCCCGGCTCTGAGCTGCAAGTGTACAGTCACATGACGCCTGACGAGGTCCAGAAAAAGACCCAGATGAAAGATGCCATCATATTGATCCAGGCTGCCCTGCTCATGCTCTGTTTGCTGACCCCACTGTTGCTCTACATATACCAGGGGAAATCAGAAGAGAGAGATTATGAAGAACCTGAGGATGACCACACATATgagGGTCTGGAAATCGAGCAGTGCGCCATGTACGAGGACATCGCCACCTTACGCCAGCCGGCTGAAGCCACCTGGGAGCACGGAGAGCACCCGTGCCAGGAGTGAGGGCCTGCTTTGGACAGGATTGGGAGTTTGACGCCAGAACAAcggacaaaaaataaaacaaatggataCCCTGCTACGAGAAGCCCATTATGCACAgacaatgtacagtatttacCGACGAGGGCTACGACATCCACATGTGCTCTTTGTCACTATCCTTTATAGCAGCAGCCCCTGATAGATGTAGAGGTGGATGCGGCTTACTTCTACTCTGCTGTGGATGATACCATATACCTGTAGATCACACCTGCTGCCGCCGCCGTGCGAAATGTGATGAAATGATCTTGGTGAGCTCGGAACAAGCCACACTGCTCGCATCCGGCACAATACATGGAGCCCACGGAACGCAGCGTTCACTCGGGGGGATAGGTTTCACTGCTCCAGTGACGACAATGGAAGCCACGTTGAGCAAAGCGAGCAGGTGGTGTCCTGTTAGTGTCCCCTTGCTGCGGGATTACATTTCATCACATTTCCTGCCAGGGGTCATTGAGATACGTCCCCACCCCTTCAGCACATCACAGTGATTGATaagcactgcacacacacacacacaaacacaatgcatgTTTGCATGGcttatacaaacacacacacactattattaatatttgagCTTCACTTCACGTAAGGAGTGTAAAAGATAACTCAAAGCCAATAGGTCGTCCTTTGCTGGCCCGTGTGTGTGGCTggcataaatacaataaagacaGTAATGGTGGGAAAACCCAGGGGGGAGCAGAACAGAATCACACACAAAGTAAAACCCAATGCAGATAACGGTCACACACCAGCCAGGAGGGATGATAatatctgtgatttatttacaaaagTGTTGCCCACATGGATATAAGGCAGACTGATCACATAGGTGCAAACTCACCAGGGCTACCCTCACCTTTACTTTACCCAGGCCTGTGAGGCGGGGGTCACCCATGACTCCAGCCTCACTCTGTAAGTGGTGCTATTATCAGGGAGGTGAGAGATATCCAGTTGGGTTTCTCTCTCCCAGTACCAGTCCAGTCTGTGCTCCAGCACTCGACGAGAGCAGGGTGACTCCCTACAGTTAAGTCTCAATTAGGTGTCAAAAGCACCTGAGGTGTCAATTTTACAGTGTACTACTTGCTTATATGGTTTCATGGAAAATCTGCAgtggtctgtctgtgtgctgatTCATATCATATTTTTGCAGTTCTCCAGGAAGTGTGATTTGGGGGATACTCTCCTTCTTTGCAGCATTGCGATCTATGGAGTTAATCAAGGCATTGTACACATCTAGTTTTATATGTAtgcttatatataaatacatactttaaatacataaataccacTTGGGCATTTGTACAGTTTATCTGAGTGAATTTATTTACCCGTGCCATGGGCAATCAGTAACCTTGTTTAATCTTTTCCTCTATTTAACCCTGGAATATCACTTCAATTTACCTTAAGCTAATAAGAGCTTGTAAGTAAAATGCTAGTGTTAATCTTGCAAGGCgtattataaatatagtaatgattatgttatgttgtttcattttgattgccctttgtattattattttcattattattatcattgcttttttttttaataaaatatttgttacaaGAGTTGTGCTGAAGagattttaaacactttttatgAAACATCTCTCCTGTCTCATGAATCCTGTCTCGAGTCTTGAGCAGGCACATATTTGACACAGTGCTATTGACATTCACAAACGCAGCTGGACAAAGCTACAAACAGCAAGTGAAGTCAGGATGCCAGTCTTTAGTTTCTCTTTCAATCGTGcatcaaaagagagagaggcgcGGTGCAAACTGTTTGATTGACTTTGTGgacaaatacaatgaaaacaaaaacaggaaatcatTCATTTCCCCAGACCatattggtttcttttttttttttgtaaactgttCTGTTACTACTACATAGAAACATGCTAACATTAGCAATTCCCATGCCCCTTCCTGAAAACTAATTCTACATAGTTTTTAATAGGATATTTTCATcttttgatagttttttttttgtttcttatctctgtatctgtgtgtctgtctatctatctatctatctatctatctgtctgcctAATGTTTCATTGTTAGCATCTCTTGTTGAGTTGGTGGTTTATATGgtgttaattgcttttttggatctgttaaataaagtttattttaaaacccta

Function

GO: NA

KEGG:

id description
K06507 CD79B, IGB; CD79B antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18959 lncRNA downstream 54740 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 58480 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 157617 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 227251 27979546 ~ 27988429 (-) True G15206
TU19002 lncRNA upstream 63260 28284362 ~ 28286445 (-) True G15291
TU19067 lncRNA upstream 230296 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 460736 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 474596 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 845009 29066111 ~ 29066388 (-) True G15448
AMCG00016716 mRNA downstream 1374 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016719 mRNA downstream 5700 28196427 ~ 28209980 (-) True AMCG00016719
AMCG00016714 mRNA downstream 67002 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016712 mRNA downstream 69664 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016713 mRNA downstream 107744 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016717 mRNA upstream 8673 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016718 mRNA upstream 43242 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016724 mRNA upstream 129267 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016723 mRNA upstream 165127 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016725 mRNA upstream 184619 28405721 ~ 28419910 (-) True AMCG00016725
TU18749 other downstream 787029 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 811758 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 845541 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 936346 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1644039 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 560370 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1980357 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2305190 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4201956 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4276405 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile