RNA id: AMCG00016718


Basic Information

Item Value
RNA id AMCG00016718
length 1184
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00016718
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28264344 ~ 28272545 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcactgctTGCCCTGGCTCTTCTCACTGATGCCAGTGCTTTGTCTTCCATGCTGCAGGTGACTTGTACTCATCCAGAGTGCTTCATCGTGCTGCATGTCCAAGAAAAAGAAGCCCAGTGTCTTGCATCGATGGAAACCAGCCTCGGGGATTCACTGAGCTCGGCAGACAATGACAGCACAGGCTGTTCGATGGAGTGGGACGGGTTGAATTGCTGGCCGGCAGCCTCGGTGGGGGACAATGTGACCGTGTCCTGCCCTGAGGCTCTGCAGACATTCGCTGTGCCCAAAGtttccaTCACTCGAAACTGCACACCCTCCGGCTGGAGTGAGCACAGCAGGCCATATTATGAGGCTTGTCAATTTGAAGACAACAATGAAGACTCCGGAGACAAGAAAGCGTACTTTGCCACCGTGAAGCTCATCTACACAATCGGATATGCAACCTCACTGATCGCCCTCATCATTGCTATCCTCATCTTCTGCACATTCAGGAGGCTGCTTTGCATGAGGACGTACGTCCACATCAACTTGTTCTCATCTTTCATACTGCGAGGGGCTGCAGTGTTTGTGAAGGACGCTGTGTTGTTTGCAGATGACAGCATGAACCACTGCACTGTGTCGACAGTTCTTTGTAAGGTGGCTGTTGCATTTTTCCAGTACTGCGTCTTGGCCAATTTCTTCTGGTTGCTGCTGGAGGGCATGTACCTACAGACCCTACTGGTTTTGTCCTTTACATTGGAGGGGAAGTTCTTCTGGTGGTACACCTTTATAGGATGGGGGTCTCCGTCGGCCACAGTTCTAATCTGGATTCTGATTAAACTGCAGTGGGACAACAAAGGGTGTTGGGATGACTTGGACAGTTCCTTTTGGTGGATCATTAAGGGGCCCATTCTCCTCTCAGTGTTTGTTAACTTCATAATATTTGTGAATGTTATCAGGATTATCCTTCAGAAAGTTAAGACACCTGATGTGGGTGGCAGTGAAAGATCACAGTACATGAGGCTGGCAAAATCCACTCTGCTGCTGATCCCTCTGTTTGGAGTCCACTACGTCGTATTTGCACTCTTTCCTGAGCACGTGGGGGTGGAGGCACGGCTGTATTTTGAGCTTGTTCTGGGATCATTCCAGGGAGTCTTAAGCAATCGCTTTGTGCGGTTGAAGAGCCACTCGGTAGCTATGCGA

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG:

id description
K04587 ADCYAP1R1, PACAPRI; pituitary adenylate cyclase-activating polypeptide type I receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18959 lncRNA downstream 103404 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 107144 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 206281 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 275915 27979546 ~ 27988429 (-) True G15206
TU19002 lncRNA upstream 11817 28284362 ~ 28286445 (-) True G15291
TU19067 lncRNA upstream 178853 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 409293 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 423153 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 793566 29066111 ~ 29066388 (-) True G15448
AMCG00016717 mRNA downstream 11160 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016715 mRNA downstream 43242 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016716 mRNA downstream 50038 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016719 mRNA downstream 54364 28196427 ~ 28209980 (-) True AMCG00016719
AMCG00016714 mRNA downstream 115666 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016724 mRNA upstream 77824 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016723 mRNA upstream 113684 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016725 mRNA upstream 133176 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016726 mRNA upstream 204969 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016727 mRNA upstream 237281 28509826 ~ 28518748 (-) True AMCG00016727
TU18749 other downstream 835693 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 860422 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 894205 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 985010 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1692703 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 508927 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1928914 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2253747 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4150513 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4224962 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile