RNA id: AMCG00016719


Basic Information

Item Value
RNA id AMCG00016719
length 2235
RNA type mRNA
GC content 0.55
exon number 9
gene id AMCG00016719
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28196427 ~ 28209980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAAAGCCTCTGCACTGCGTCTGTGCAGCAGCCGACATTGGTCAGGTTTAGCACCCgcttttgttcgttttttttgtttgtttgtttatgattGTATTATATGTTTGTATGCAAATGCTGTTAATATTGAGATTCAAGTCTCTATTCCCCCTTCCCAAAAATTGAAGGCACAATTGGTTGCGCTCGCCTGTGCTTAACAGGAAGTTAACGTGTGCACGCAGCGTGCGCTTTTTGCGTGTGACGGAAGCAATGCGCCAAATTCAACCCGGCCGCAGTGGGGAAGGAGAGGAGCCTGCCAGGCTGCGCAACATGGACGTCGACGTGCAGGTGATTGAGTTTAAAGTGCCCACCGAGCACAACAAGACGCTGTTTGTGTGGAATATCCCGCCTACCTTTTCGGAAGCCGACATTTACGCCGGCGTGAGCGAGTGCTACCGGCGCTTCGGCGCGCTGTTCTCGGTGCTGGTGTGCCGCGGTGCCGCGGGGGCGCAGCCCGGCTTCTACGCCGTGGTCAAGTTCTACTCGGCGGAGCACGCGTCCCGGGCGCAGAGAGCCACGCACGGCAGGGGGCTGTTCCAGGAGGCGCCCTTGAAAGTCAGCCTCTGCACTAGACAGAATCGATTTTTTTACCGGAATGTTAGCTATCTTCATAGCTCCAAGTGCCATGAATTGGCCAACTTCTACCTTGGCTTTAATGGTTGGTCCAGCCGGGTAGTAACGCTCAAGGATCTTTCCAAAAGCGATGGTCCTGAACAGGTGCCCTTGGGGGAAGCCACTCAGACAGTCAATTTGAAATATGGCTGCATAGTGGAATTAATTTTCACTAAACATGGAGTGAGCTGCAGGGGAGTGGGGGTGGCAGAGGAAGTTTTCCCAGCGGATACAGatCCTGAGGAGCTCTTGATGAAACGGGGAATGCTACAGAAATCGGCCAAAGAGAGAGCAATCTCTTACGCCTTCCAGAAAGTACTCTTGGTTGTACTAGACCTCCCCGGCTGCCGGGCCCAGGGCGCCTCTGCTCCCGATGCACTGCTCATGCACGTCGGGTCGCCTGTCCTGCCCGGCCGCCCAGAGAGGCAGACTCGAGTCCATAGCCGTGGACACCAGGAAAATTCCTCTCCCCAGCGGACCTTTCGGGATCTGGAGAAAGTCGAGGTGaggaagaaaaatgtgcagGAGGCCGCTTGGATGGCTCCCACAGAGATGGAGACACCAGAGCACAGGAGGGAAGCAAGAAAACCCCTCAAAGCGGAAAACCAAACTGAAGAATACCCTACCGTGACGTCGGCAAGCAAAATTAGGTTGTGTGAAGGTATGCTTAGTCTCCTGACACCACTGAACGAGGTGGTGGAAAGCAAGCAAGGATGGGAACATGCCTCCGTCAAAATGACCAGTCAAGAAAATGAGGTAGCGGAGGAACGAGCCCTGAAATCTCCATCCTCCACAAACACCAAGGCTGGTGCGGTGTCAAGGGAAATTGTGAGAGAGGGGGAACATCCCCATGTGAAGAGAGTGCGCAGAGCGGTGGACCAGGGTGGAAATTCTGATGTCTTTCGTGCCGCGAGATTTGATGCAGATTCCGACGCGTTCTTCGTCAGGGAAGCTCTTGCTCAGCCTTTCGGTGAACAACGCCGAGGGAAAGACCTGCCGGAGAAAGGACGCGACCCAGAGAAACACTCAGCGTTTGCTCCtggaaaagaaggagaaaaccCACCTTTTGCCAGCCCACGGGTGACAAATCGAATGTCTGCCAATGAGCTCTATGCGGCTGCTGCAGAGAAGCGGAACAATATCGTTCCCAGCCCGAACAGGCCTAAGCACAAGCACAGCGGAGCTCAGAACGGCCCTGCTGTTCTTTCTAGAGCAGCTGACCCAGAGCTTCCCCCTGGCACCATTTCACACTTAGCATCTCACAGCCAGGAAGCTGCGTCCCCTCAGACTCTCCAGGCTGCCCTGCAGCAGGTCCTGAAAGAGCTGCGGTCTATTGTGTCTGATGGACGCAGGCTCTCTCTGCTCAGGCAAGTTGTTGAGGTGCAGTGCCTGAGCCCGCATGCGTCGGTCAGCTGTGAGGCCGTGCTGTCGGGTCTCAGTGCTCTTTTGCAACGTGTCCTGAGTGCAGACGTACTGGAGGAGGTGCCTGAAGGAAAACCCACAGGACCCAAGAGTAGCAGTGAGCATTTGGAGTCCTACAGGGCTGGGCTCCTGCTGGCATCTTTCATTTATCCACTGATCCTA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10874 RDM1, RAD52B; RAD52 motif-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18959 lncRNA downstream 35487 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 39227 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 138364 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 207998 27979546 ~ 27988429 (-) True G15206
TU18900 lncRNA downstream 207998 27982888 ~ 27988429 (-) False G15206
TU19002 lncRNA upstream 74382 28284362 ~ 28286445 (-) True G15291
TU19067 lncRNA upstream 241418 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 471858 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 485718 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 856131 29066111 ~ 29066388 (-) True G15448
AMCG00016714 mRNA downstream 47749 28147827 ~ 28148678 (-) True AMCG00016714
AMCG00016712 mRNA downstream 50411 28130054 ~ 28146016 (-) True AMCG00016712
AMCG00016713 mRNA downstream 88491 28092244 ~ 28107936 (-) True AMCG00016713
AMCG00016709 mRNA downstream 198753 27991647 ~ 27997674 (-) True AMCG00016709
AMCG00016701 mRNA downstream 353759 27840195 ~ 27842668 (-) True AMCG00016701
AMCG00016716 mRNA upstream 1864 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016715 mRNA upstream 5700 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016717 mRNA upstream 19795 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016718 mRNA upstream 54364 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016724 mRNA upstream 140389 28350369 ~ 28357780 (-) True AMCG00016724
TU18749 other downstream 767776 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 792505 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 826288 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 917093 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1624786 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 571492 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1991479 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2316312 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4213078 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4287527 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile