RNA id: AMCG00016723


Basic Information

Item Value
RNA id AMCG00016723
length 1464
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00016723
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28386229 ~ 28387692 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCGATGGCTCCCGCTCTGACCGACGCGCCAGCCGAAGCTCACCACATCCGCTTCAAACTGGCTCCCCCTTCCTCCACCCTCTCCCCAGGCAGCGTGGAGAACAACAGCAACGCCAGCAACATCATTCTCTCCAGCAACGGAGCAGTTAAGCGCAAGCCCATCGTCTCATCCGGTGAAGAACGTGCCCTAGACTTCCGGGGCAGCAGCAAGaaggaggagcagcagcagcaccaggaGTCGTCGCCACCGACGCCTCTGGGCAAGCTGCAGCCTCTGGTGGCCTCTTATCTCTGCTCTGATGTGACTTCGGTCCCATCCACTAAGGAGTCCCTGAAACTGCAAGGCGTTCTCATCAAGCAGACAGTCCTCAAGTCCCACGCCATCCTGCCAAATACCTACTTTAACAGCAGAAAGCACCAGACTTTGGAGTTTTCCGGGGACCAGATCAAAAGCATCATGAGTGTCAGCAGCACACCTGTCTCCCAACCACAGGCCCCGGTCAACGGCCTCGCTAAGAAACTAGGAAAGTCTACCGCCGGCTCCGAGCGGGACTGCCCCGCAGCTCTGGCTGCTGTCAATGGTAACAAGCCCCCTGCCATCCAGGACTCCCACCTGCACACAGTGCCAGGGGCCAACTCTGCCTTGATCAGAGGAGATTTGACTGGTTCTGTTCTTCTCAAAGGAGGAGGCTCagatcagcagcagcagcagccaccgCCTGCTGGGATTTTGAAAGACGCTGCAAATAACTCTGAGCCGCCTCCTCCTTCCTCCACTAACGCTGCCCCTGCAGCCGGGGCTGCGGTGAGCCAGCTGGACTTGACGTCCGAGCAGACGGACGCCGATGATGGGGAGGAGGAAAGCAGCAGTTCTTCCGTTCGGCTGGGGCTGATTTCCCTGGACTCGGAGGGTGCGGGCTGCAGTGGGAGCAACAGGCAAGCGAAATCAGCCCACTCTCCGATAGCCCCCCAGCCCCAGCAATTCAGCAGCTTAGACGCGGAGGTCAGGGCCCGGAGCCTGGTGAACCAGAACCGGCAGAATGAGATAGAGAACAGACTGCGCCGGCTGCGTAAGCGGCTGCAGGTGGTACAGGCCAAGCAGGTGGAGCGTCACGTGCAGCAGCAGCTTGGCAGCTTCCTGCAGACCACCTTCAGCAAACTGCCCAGTCTGGACTCCCTGCGACAACGCAGCCCCGCCGTCCTCACCCGTAAGGCCGAGGCGGCGCTGCGCCGGGCCGCCAGCGAGACAGGTGGGGACGATGGGCTCAGCCAATTCCTGAAGAGCGGCTCGGTGCCCACAGAGCTGGAGAGGCTCTCACTCAGCGGCACGGCCAACCTCAGGGCCACAGAGAGCGCCTTCGACTCGGACGTCACCGAGAGCAGCTCAGGGGGGGAGACTGACATTGAGGAAGAGGAGCTGACCAAAGTGGACATTGAGCAGCGCCACATCTCACTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19002 lncRNA downstream 99784 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 225289 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 229029 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 328166 28003239 ~ 28058063 (-) True G15228
TU18900 lncRNA downstream 397800 27982888 ~ 27988429 (-) False G15206
TU19067 lncRNA upstream 63706 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 294146 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 308006 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 678419 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 814212 29201904 ~ 29208644 (-) False AMCG00016740
AMCG00016724 mRNA downstream 28449 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016718 mRNA downstream 113684 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016717 mRNA downstream 133045 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016715 mRNA downstream 165127 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016716 mRNA downstream 171923 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016725 mRNA upstream 18029 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016726 mRNA upstream 89822 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016727 mRNA upstream 122134 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016733 mRNA upstream 337917 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016732 mRNA upstream 393785 28781477 ~ 28785499 (-) False AMCG00016732
TU18749 other downstream 957578 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 982307 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1016090 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1106895 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1814588 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 393780 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1813767 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2138600 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4035366 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4109815 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00008962 False 4711 mRNA 0.52 14 NC_007123.7 4686145 ~ 4725660 (+)