RNA id: AMCG00016724


Basic Information

Item Value
RNA id AMCG00016724
length 1960
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00016724
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28350369 ~ 28357780 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGGGCGGAGGGGCGGTATGCTATGGAGAGGGCCTCCATTGTGAGTCACTGGAACTGGCTGCAGGCTCACATCTCTGACCTGGAGTATCGGATCCGTCAGCAAACTGATATCTACAGGCAGATCCGTGTAAACAAGGTCAGTACTGAGCCATGGGTGCGCTGCGCTGCGTTCATCGACACGCCGAGTCCGATTTTAGAGGCAGTGGACAGCATGGCATCCCCTCACAGCCCCGCCGCCGACGGGCTCTCCTGGAAGGGCTGTGGGTCAGCAAGACCTGTCAACGGAGTCATCAGCAGTCTTCACCATGGCCAGCCGGACTCGGGGTCGCCGGACGACTCAGACACAGAGGAGCTGCTGAACAAGAAGCAGCGCCTGACCCCACTGTCCTCGCCCCCAGACAACACTTGTGTGGCGGCCCGCACACGCCCCATCCTCAGCTGCAAGAAGCGCCGCCTCGTACGTCCCAGCACTGTCGCCACCCTGAACCGCAAGGTTCATCGCAGCTCAGGGGCTCGCTGCAGCTGTGATGTGAACCCCCTGTGTGTGATCTGTGGCGGCCGGGCGCAGCCCTGCTGCGACTTCCAGTACGAGAGCCCCCTTCTGGAGAGGCTATCCCAGTTCGACCCCTGCGTTCACCCcatcctctctttctctgacgATGTTTCCATGAACCTGCACTTCCAGAGGGTGATGAAGTCGCATTGGCAGAACAAGCCCCTAGAGAAAGTGAAACCCCTGAAGAAGCTCTCCCTTAAACACAAAATCTCCCTGTCAGGCCGACTGCCTGACTCCACAtccaaagacaaacacaaactaacAAACTCCCTTCTTGCAGCAGCCAgaCACTCACACCACAAAGTACGCCCAGAAAAGATTCACCGACAACAGATAGATGACTTGCTGAGTGCTTCGAAGCTTGAGAGGACCCCGGTCTGCAAGCAAGAGAGGACTCCGGTCCTCACGCCCACCTCCTATGATAAGAGCCACAGCAGGAAAAGGCAGCGAGATCACTCCACCGAGAGGGCAGAGCCTACCCCCAAACTCTACATGGACACGGGAAGCCCCTGTTCCTCCTCTCTCGCCAACCTTCACACCCCCGCTCACAGCCCACTGATGAGACAGCTGTCCACCTCCTCAGAGAGCTCCACCCCCTTCGCCCTCAACAGCCAAAGTGCCAGCGGCACCCCGCAACCAGTTCGAAGGCGAAGGGGGGAGAGTTCGTTTGACATCAACAACATCGTTATCCCGATGTCTGTCGCCGCCACAACACGCGTCGAGAAACTTCAGTACAAAGAAATCCTGACGCCCAGTTGGCGAGAAGTGGATATCTGTGCACAGCCAATAGCCGAGGAGGATGACGTAATGGAGATCGAAGACCTGTCGGACGCAGCATTTGCTCAGTTACACTTGAAATGTGAAGACCTGGAGCGTTCTCGCTGGACCTGGACCGCCAGCGCCCCCGCCAAGAGACGAGGGAGCAGGTCTTACAAGTCATCAGATGGCCGGACGACACCCCTGCTAGGTGGCACCAACCCCTCCACACCCCAGCCCGCCTCTCCCGATGGGGGGCACTTCCAGTCCCTGCAGGACTATGGCCACATGCCCTCACCCCACAGCCCCGCCAGCCCCGACGTGCTGTCCAACCCCCACACCCCCGGCTCCCGAGACTCCCACCGCCCCCAGCCCGGTGACGACACGCGCTGCTCCACCCCGGACTTCACCTTCGAGGAACTGCCGTGGGAGAGGAGGAACTTCCCTCTGCCGTGCGCCCCggagccagagccagagccGGAAGACCTGGGCGAGGCTGCGGAGAGGATGATGCGCGGAATCCGCAGGATCTCGGGCAGCAAGTCCAGCAGCAGGTCGGAGTCGGAGAACGGTCCTGCCTCGCCCCTCTCGGAGGATGGAAAGGCCCGCCCACCCCCCGTGGCGCTCCGGCCGGCCCACCGA

Function

GO: NA

KEGG:

id description
K18400 KANSL1; KAT8 regulatory NSL complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19002 lncRNA downstream 63924 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 189429 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 193169 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 292306 28003239 ~ 28058063 (-) True G15228
TU18901 lncRNA downstream 361940 27979546 ~ 27988429 (-) True G15206
TU19067 lncRNA upstream 93618 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 324058 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 337918 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 708331 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 844124 29201904 ~ 29208644 (-) False AMCG00016740
AMCG00016718 mRNA downstream 77824 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016717 mRNA downstream 97185 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016715 mRNA downstream 129267 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016716 mRNA downstream 136063 28211844 ~ 28214306 (-) True AMCG00016716
AMCG00016719 mRNA downstream 140389 28196427 ~ 28209980 (-) True AMCG00016719
AMCG00016723 mRNA upstream 28449 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016725 mRNA upstream 47941 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016726 mRNA upstream 119734 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016727 mRNA upstream 152046 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016733 mRNA upstream 367829 28725609 ~ 28738603 (-) True AMCG00016733
TU18749 other downstream 921718 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 946447 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 980230 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1071035 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1778728 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 423692 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1843679 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2168512 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4065278 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4139727 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049894 False 3203 mRNA 0.55 14 NC_007114.7 22079219 ~ 22152746 (+)