RNA id: AMCG00016725


Basic Information

Item Value
RNA id AMCG00016725
length 3756
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00016725
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28405721 ~ 28419910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTTGCTCGCTAACGGTCGGTGTGTTTAAATCCTCGGAGCTCCTTCGGGCCCTGAAACTGAACTAAAGGCGAAGAGGAGTTGCGGAGAGAGGGAAGCGAGTGAGAGGCAGAGAAAGAAGGAGCTCAATCAAGGGATGACGGTGCTGCAGGAACCTGTCCAGgcTGCGGTTTGGCATGCACTTAACCACTATGCCTACCGAGATGCTGTTTTTCTGGCAGAGAGACTATATGCTGAAGTGCACTCAGAAGAAGCTCTTTTCCTGCTGGCTACATGCTACTATCGCTCTGGGAAGGCCTACAAGGCATATCGCCTTCTCAAGGGCCATAGCTGCACTACTCCCCAATGCAAATACCTCTTGGCGAAGTGCTGTGTTGACCTTAGCAGGCTTGCAGAGGGCGAGCAGATCTTAACAGGAGGAGTTTTGAATAAACAGAAGAGCCACGATGACATTGTTACTGAGTTCGGAGACTCTGCCTGCTTTACTCTTGCTTTACTGGGGCAGATTTACTGTAAAACTGATCGTTTGGCCAAAGGTTCAGAATGTTACCAGAAGAGCCTGAATCTAAATCCTTTCCTCTGGTCTCCATTTGAATCCCTGTGTCAGATCGGTGAAAAGCCAGACCCTGATCAAATGTTCAAGCTGACATCCCTTCAGAATTTCAGCAGTTGCCAGCAAAATAATTGCCCCACGTACAGCTCTACTCACAGCGTTTCCCACAGACAGATTGATACAGTCCTGATGGAAACTCCCCAGGATACTTTAGAACTAAATAGGCTGAATCTAGAATCTTCAAATTCCAAGTATTCATCTTTAAATACAGATTCTTCGGTGTCCTATATTGATTCTTCAGTAATTTCCCCCGACTCTGTGCCACTTGGGACAGGTAGCTCTTTACTATCCAAACAGGCacagaacaaaccaaaaagtgGACGAAGTTTGCTTGGGGGACCTGCGTCTCTTAGCCCACTTACTCCTAGTTTTGGAATCTTACCACTTGAGCCGAGTCCGGGAGATGCGTCCTACCTACAGAACTTCACAAACACTGGTTCTGTGATGATGGACCCACCCTCGTCTGGAGCGCCGCCAAAGAAGTCTGTAGCCCGAATCAGCCAAGCAGGTACAAAAGCGGTGTTTGCACAGAGTGGGAACAGTAGAGACGTTCTCCCAATACCTTTTAAccagacacagagcacagcccCACAAACTAGTACGACGCCCCAAGTGCTGAGCCCGACCATCGCTGCTCCGCCCAACGTGCAGCCGAGACGCAGTTCGCGGTTGTTTACCAGTGCCAGCTCTACTGCCAAGGAGAACAGCAAGAAGTTGAAAATGAAGTTCCCCACAAAAATCCCAAACcgcaaaacaaagacaaaatccaGTAAAGGAGGGATCACAACATCAAACATGAATGAAAGTATAGAGATCCTCAAGTTAGACTCTTCTATAATTTCTGAAGGGAAGGGCAACATGGTCGCACCTCAGTTGCAAGCCTTCACTATACAGAAAGCTGCTGCAGATGGTTTGATGAACCTCATGCGTGACATGGGGAAAGGTTACCTAGCACTTTGTTCCTACAACTGTAAAGAAGCAATCAACATCCTGAGCCAGCTGCCTTCTCACCATTACAACACAGGCTGGGTTCTCAGTCAGGTCGGGAGAGCACACTTTGAGCTTGCAGAGTACATGCAGGCGGAGAGGATATTTTCCGAAGTAAGGcgcattgagagctacagagtTGAAGGAATGGAAATATATTCCACAACCCTTTGGCAtcttcagaaagatgttgcccTGTCCGCCCTCTCTAAAGATCTCACAGACATGGATAAAAATTCCCCAGAGGCCTGGTGTGTTGCTGGCAACTGCTTCAGTCTGCAGAGAGAGCATGACATCGCAATCAAGTTCTTCCAGAGGGCGATCCAGGTGGACCCGAGCTTTGCCTATGCCTACACGCTGCTGGGCCATGAGTTCGTCCTCACCGAGGAACTGGAGAAGGCCCTGGCCTGCTTTAGAAATGCCATTCGTGTGAACTCGAGGCATTACAACGCATGGTATGGCTTGGGGatgatttattataaacagGAGAAGTTCAGTCTGGCAGAAATTCACTTTAAGAAAGCCCTCAGTATCAACCCCCAGAGCTCTGTCCTGCTGTGCCACATCGGGGTGGTGCAACACGCGCTGAAGAAGTCTGAACATGCATTAGAAACCCTGAATAAAGCCATTAACATCGACCCCAAAAACCCACTATGCAAATTCCACAGGGCCTCGATTCTCTTTGCAAATGAAAAGTACAAGGCTGCTTTGCAAGAACTTGAAGAACTGAAACAGATTGTGCCCAAAGAGTCTCTGGTTTACTTTTTAATAGGAAAGGTTTATAAGAAGCTGGGTCAGACGCACTTAGCTCTAATGAATTTCTCTTGGGCCATGGATTTGGACCCCAAAGGGgcaaacaatcaaatcaaagaGGCCATTGATAAACGTTACCTCCCTGATGACGAGGAACCGGTCATTCCAGAGGATTATCCATATGACTCGGCGGAGGCCGAGGAGTCGCAGGAGAGCAGTATGACAGACGCAGATGACACGCAGCTTCACACAGCAGAAAGTGACGAGGTCTTTTAATCCTAACGATGCCAATCTGAAGTCGGCCACTTGATTTCAGTTGTGAATGACGACAAACTGCTGCTAATACAGTACCTCCTAACCTTCCTaccatctgcttttttttttttttcctccctattctttcctttttctttgccTTAGTGTTGAGTTGGGTTCACAGTGCAGCTAGTGCTCGTTCTGTTCCCACTCTGTTCACTCTCgaaaacaaatgtacactttTGTGTGGAAGTTCTCAAACTCCTCATGACGAGAAAAGAGAGATCCCTTCTGGGCTTCAGTTTGTCAGTGTTGTACCTTCTGAGGCCGAATTCCTGCAGTTATAAGAGCAAGTTCTCACACCTCCAGTCTGGAACATGTCCTCTTAAATTGAAAGCCATTTGTTAGTCTTAgtcttaatgtttgtttttattattacatcgTCATTAACTTAATAAATATCGCTATAGGAACCTGGGATTCAAATTATTTCTCTTGAGTGGCAATTATTGTATCATTTTACTTCCATTGGGACAGGTAAATGTAACTAATTGCAAAGGACAGATTGGACATTTGATTGTAGTTGACACTGGGAGGTGGGAATAATGCGCACTGTTAGCAGTCTGTGGAGATCTGGACACTGGGAGGATGTAAAGCTGGAAAAAGCAATCGGACTTTTGAAACTTACCctaaattcagttatttttcagaAGAACCTGGCCTATTCTGCAgtaattttggttttaaaactaTTTCTTGGAAAACTTGCCTTTTCAAAATCCACTTAAAGTTGTTCTGTAAGGGCTAATGAGCAGGGATAAATGCTAACCATTTGAAAGGGTACAATGGTGTCACcagttcatttttgtattttattttgttccccttTTTTTATCAACCATCATTTGTAGCCATGGAGGAGAAAACAAGAACTTTTAGTAACTTTTTAATTATAGGCACTAGAGTCAACTGACATTTTAAGTTTCATCACCATATTTCAGTCACTTAAACCAGTTTGCTTGAAGTGTTGTTAATAGTATCCTTTTTTGTGTATGAAGATGCAGCTACTAATTCAATTTTGCTCTATACAAAATGCATATGTAGGGTGcattaaacagaacaaacaNNNNNNNNNNccccccccccccc

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
K03350 APC3, CDC27; anaphase-promoting complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19002 lncRNA downstream 119276 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 244781 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 248521 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 347658 28003239 ~ 28058063 (-) True G15228
TU18900 lncRNA downstream 417292 27982888 ~ 27988429 (-) False G15206
TU19067 lncRNA upstream 31488 28451398 ~ 28451632 (-) True G15330
TU19115 lncRNA upstream 261928 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 275788 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 646201 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 781994 29201904 ~ 29208644 (-) False AMCG00016740
AMCG00016723 mRNA downstream 18029 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016724 mRNA downstream 47941 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016718 mRNA downstream 133176 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016717 mRNA downstream 152537 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016715 mRNA downstream 184619 28215680 ~ 28221102 (-) True AMCG00016715
AMCG00016726 mRNA upstream 57604 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016727 mRNA upstream 89916 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016733 mRNA upstream 305699 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016732 mRNA upstream 361567 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016736 mRNA upstream 529540 28949450 ~ 28953796 (-) True AMCG00016736
TU18749 other downstream 977070 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1001799 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1035582 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1126387 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1834080 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 361562 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1781549 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2106382 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 4003148 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4077597 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile