RNA id: AMCG00016726


Basic Information

Item Value
RNA id AMCG00016726
length 870
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00016726
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28477514 ~ 28492616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAACGCAGACCCGAGCCATTTAATTTTTGTGGCACTTTCTCTTCTTGACAGGAGCATCCGATGCCTGAGAAACATAATCCACTGGAATTTAATCAGCGCTTTCATTCTTCGCAATGCCACCTGGTTTGTGGTCCAGCTGACTATGAACCCAGAGGTGCATGAAAGCAACGTGaTCTGGTGTCGACTGGTCACAGCTGCATACAATTACTTCCACGTGACGAATTTCTTCTGGATGTTCGGAGAGGGATGCTACCTCCACACCGCCATCGTCCTCACCTACTCCACGGACAAACTGCGCAAGTGGATGTTCATCTGCATTGGATGGTGCATTCCGTTTCCAATCATTGTTGCCTGGGCTATCGGGAAGCTTTATTATGACAATGAAAAGTGCTGGTTTGGGAAGCGGGCTGGAGTGTACACCGATTATATCTATCAAGGTCCCATGATTTTAGTGCTGCTGatcaATTTTATCTTTCTGTTCAACATTGTAAGAATTCTGATGACAAAACTCAGAGCCTCAACTACATCAGAAACTATACAGTACAGGAAAGCTGTGAAAGCCACCTTGGTGTTGTTGCCACTCCTGGGGATCACCTACATGCTGTTTTTTGTCAACCCTGGAGAGGATGAAATTTCCCAGATtgtctttatatatttcaacTCCTTTTTGGAGTCTTTTCAGGGCTTCTTCGTCTCCGTCTTTTACTGCTTCTTGAACAGTGAGGTACGATCCGCGGTGAGGAAACGCTGGCACCGGTGGCAAGACAAGCATTCAATCCGGGCACGAGTGGCTCGAGCCATGTCCATTCCCACCTCGCCCACACGTGTCAGCTTTCACAGCATTAAGCAGTCCACCGCGGTGTGA

Function

GO: NA

KEGG:

id description
K04578 CRHR1; corticotropin releasing hormone receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19067 lncRNA downstream 25882 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 191069 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 316574 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 320314 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 419451 28003239 ~ 28058063 (-) True G15228
TU19115 lncRNA upstream 189222 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 203082 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 573495 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 709288 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 768696 29261312 ~ 29264667 (-) True G15525
AMCG00016725 mRNA downstream 57604 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016723 mRNA downstream 89822 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016724 mRNA downstream 119734 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016718 mRNA downstream 204969 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016717 mRNA downstream 224330 28229775 ~ 28253184 (-) True AMCG00016717
AMCG00016727 mRNA upstream 17210 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016733 mRNA upstream 232993 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016732 mRNA upstream 288861 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016736 mRNA upstream 456834 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016738 mRNA upstream 529011 29021627 ~ 29024518 (-) True AMCG00016738
TU18749 other downstream 1048863 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1073592 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1107375 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1198180 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1905873 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 288856 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1708843 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2033676 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3930442 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 4004891 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049884 True 9998 mRNA 0.38 14 NC_007114.7 21669545 ~ 21889616 (+)
grasscarp (Ctenopharyngodon idella) CI01000034_02875948_02953386.mRNA True 3077 mRNA 0.42 15 CI01000034 2875658 ~ 2954520 (-)