RNA id: AMCG00016727


Basic Information

Item Value
RNA id AMCG00016727
length 201
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00016727
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28509826 ~ 28518748 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATTCTGCAATACGTCTATAGATGGAATAGGGACCTGTTGGCCCAAAAGCAACGCTGGGGAGTTGGTGTCCCGACCTTGTCCTGAGTACTTCTATGGAGTCCGATACAACACTACAAACAATGTGTACAGGGAATGCCTCTCCAATGGGACCTGGGCAATGAAGGGCAATTATTCACAATGCCAAGCAATTCTGAATGAA

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19067 lncRNA downstream 58194 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 223381 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 348886 28160687 ~ 28160940 (-) True G15254
TU18956 lncRNA downstream 352626 28130012 ~ 28157200 (-) False AMCG00016712
TU18931 lncRNA downstream 451763 28003239 ~ 28058063 (-) True G15228
TU19115 lncRNA upstream 163090 28681838 ~ 28682338 (-) True G15364
TU19116 lncRNA upstream 176950 28695698 ~ 28695920 (-) True G15365
TU19205 lncRNA upstream 547363 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 683156 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 742564 29261312 ~ 29264667 (-) True G15525
AMCG00016726 mRNA downstream 17210 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016725 mRNA downstream 89916 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016723 mRNA downstream 122134 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016724 mRNA downstream 152046 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016718 mRNA downstream 237281 28264344 ~ 28272545 (-) True AMCG00016718
AMCG00016733 mRNA upstream 206861 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016732 mRNA upstream 262729 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016736 mRNA upstream 430702 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016738 mRNA upstream 502879 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016741 mRNA upstream 672986 29191734 ~ 29201720 (-) True AMCG00016741
TU18749 other downstream 1081175 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1105904 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1139687 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1230492 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 1938185 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 262724 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1682711 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 2007544 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3904310 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3978759 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile