RNA id: AMCG00016732


Basic Information

Item Value
RNA id AMCG00016732
length 1679
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00016732
representative False

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28781472 ~ 28785507 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATTGAAAGAGATACAGATTTACTACCTGGACATTTTAAGCATTGAGAAGTTCCTAGAGTCTTCTTTTCTATTATATAGatacatttcaatgtgtttttttatatagatctaaatttgcttatttgtgtatttgggATCGTTTCGATTCTTCAGAAATAATTAAGACCGTTGTTAGTATTTAGAGGCGCTGCGAGATGGAGAGTTTGAAAGTCTTGATTGTAATGGTCGTCCTCTTCGCACAAGTGTATTGCGAGGAAGACTCTCCTCCAGCCGAGGAACGGGAGTACTGGTCTTCAGAGAATTGGCAGGAGGAGCCTGCGGAGAACAGCCTGGCGCACCGGGTGGCGGAGCTCATAAAGAGATCCAAATCGCACCAGTTCTACGGGCTGATGGGGAGACGCTCAGGTGCTCCACAGACTGTACCACTGGGCCGTAAAAGACACAAGGGAGAAATGTTCGTAGGTCTCATGGGCAGGAGATCTTCTAGTGGAGAATTGCAGGAAGAATGGGACAGACCTCAGTACGAAAGAAGACGCAAATAGATTTGAGATAATAACACGCCTTGCCTTCTGCATTTCTTGCTCCATTTGCCCTGATACCCCCCCACACAATCCCTCCCTGACCCCTCCTCCTTCCCTTTTCTTTAGAACCCTTGGATCGATCTTAAAAAGGCATTAAACAACCAACCAGAtacacaaactaacaaaaacacaatggaaatacaCGAAGAAGAGCACCCAATAAATCCTGAATGAATCGTTcatggaaaaagaaagaaagaaaactaataaGATGCCAACCCTGGCTATCTTTCAGTAATTATCATTCCTGAGCCAGTGAGTGTGCCAACTGTAATGTTTAGGGAGGCAAGGCATTTGGAAATAGGAGGAATGGAGATGTTATTAATACCATTTGACTACATTGTCTAGGTTTGAAAAATGCAGTCTTTCCTCTTGTACGGATTTCAGTCAAACTCTCTCCAccatcaaagcaaacaaacaaactgaagaaGGGTCCCACTCTGAACCAGGCACAGGATAgactatttattatttcattatttaatatgtattgatgGTACTGCCGTGATTTTAACAGTTAAATTGCCCTGTGATCACATCTAATGAGCATATCAAGTATGAGGGGAAACAGAACCTTTTTTTCCAAGTAAATTATGAGTAATTCATCTGGAATCAagtctgaatgtgtttttttttttttaagagtatAGATACCATTAACCTGTCAGGACAGGGTTCTGAAAAGGTACAAAAACAGGTACATTAATTTACCTATAATACCTATTTATCGATTATGTGTTGCCTTCTGCCTATCACAGGTAGATTGAACTATATTGTTATCAACTTAATTTGGGTATTCTGGTATAACCTTATTTATATAGCAGTCATTGAAAATACCTGAATATGCACTAGTCCATCTCCATTGTCCTCTTCGAGTATCTCCCTTGTAATCCAAATGACTCAACGCTGACCAAActgttaaaattataaaaaggaCTCAGTTCAGTGCGGTGTTTATATTTCCATGTAAGTGCACTTTGTGTCATTCAAGGTAGTTTATAAGATATACTTGTACCTAGCTGTTGCTATAAATAAATTGTTCGAACACTGTTGTAATACAATTCatgtaacataaaataaaggtgATCTTGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19116 lncRNA downstream 85557 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 99139 28681838 ~ 28682338 (-) True G15364
TU19067 lncRNA downstream 329845 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 495032 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 620537 28160687 ~ 28160940 (-) True G15254
TU19205 lncRNA upstream 280612 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 416405 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 475813 29261312 ~ 29264667 (-) True G15525
TU19365 lncRNA upstream 1017396 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 1253291 30038790 ~ 30041875 (-) True G15673
AMCG00016733 mRNA downstream 42874 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016727 mRNA downstream 262729 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016726 mRNA downstream 288861 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016725 mRNA downstream 361567 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016723 mRNA downstream 393785 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016736 mRNA upstream 163951 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016738 mRNA upstream 236128 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016741 mRNA upstream 406235 29191734 ~ 29201720 (-) True AMCG00016741
AMCG00016740 mRNA upstream 416373 29201872 ~ 29225587 (-) True AMCG00016740
AMCG00016743 mRNA upstream 480260 29265759 ~ 29288483 (-) True AMCG00016743
TU18749 other downstream 1352826 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1377555 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1411338 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1502143 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 2209836 26568669 ~ 26571641 (-) False G14843
TU19522 other upstream 1415960 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1740793 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3637559 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3712008 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 3712008 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile