RNA id: AMCG00016733


Basic Information

Item Value
RNA id AMCG00016733
length 3138
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00016733
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28725609 ~ 28738603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTAAATCCATCCAGGCTGCGTCCAGGGCAGCATGGGAACCCAGTCTTGGGATCCCGGAGCATGAATCTATTTCCCGTTTTAAGGATATGAAGGGTGACAATTACAAAACAGGAATCATCTCCTCTTAGATTGAAGATAGAAAGCTAGAGTCTTATCTGAAGTATACCGAGTGCTGGTGTGTCCCAGCCCCGGTGCCGGTGCTGATGCTGTGATCGTGTCGTGTTCCAGGATGGGGGACAGGACTGGTCTGAGCCCCGCCAGTGGCATCACTCCAGTGCAGCAGATGGTGGCGTCTGGCACTGGTGCCCTTTTCACATCCCTGTTTGTCACACCACTGGACGTAGTCAAGATAAGGCTGCAAGCCCAGAAAACACCGTTCTACCAAGGGAAATGTTTCCTGTATTGTAATGGGCTGATGGACCATGTTTACGTGTGTGAGAATGGTACAAGCTGCACCAGCTGGTACAAAACGCCCACCCACTTCAGAGGGACTCTGGATGCCTTTGTGAAGATCACCCGCAATGAGGGTGTGCGGTCTCTGTGGAGTGGGCTCCCACCTACACTaGTGATGGCCGTGCCGGCTACAGTGATCTACTTCACCTGCTATGACCAGCTGCGGGACTTCCTTCGGTATGGCATGGGTTACCAGGGCAGCCAGGTCCCCCTAGTGGCTGGAGGCCTCGCAAGATTGGGTGCGGTCACGGTCATCAGCCCGCTGGAGTTGGTCCGGACCAAGATGCAGTCCAGGCAGCTGTCGTACGCAGAGCTGAGGGTCTGTATCCAGTCGGCCGTGGCCCAGGATGGCTGGCTGTCTCTCTGGAGGGGCTGGGGACCCACCATACTCAGGGATGTGCCCTTCTCAGctcTTTACTGGTTCAACTATGAACTGGTCAAGGCCCAGCTGTGCCAGGGCTACAGAGTACACGAGGCCACCTTCTCTATGAGCTTCTGCGCAGGGGCCATTTCAGGCGCGGTAGCTGCGGTGATGACCCTGCCGTTCGACGTGGTGAAGACCCGGAGGCAGATCGAGCTGGGCGAGATGGAGACGTTGGCAGTTGTTGCAAAGAAGCCCTCCTCCACCTTAATGATCATGAGAAGGATCTGGGCAGAAGCTGGCTATCGTGGACTCTTTGCAGGTTTTTTGCCACGGGTGATCAAAGTGGCCCCAGCGTGTGCTGTGATGATCAGCACCTATGAGTTTGGAAAGGCCTTCTTCCAGAATCTCAACCGGGAGCGAGAGCTACAGGGACAGTGAGGTGCTGTCCGGCCCCGGCCCTCTGCCCAGAGGACACAGCCACCTGAACTAGATGGTGaaaatgcagcagcagcatcagccCCAGAGGTCCAAATCGTTTAAAAAGGCCCAACAATGGGTGTGAGGCTGGTATGGACAGTACTTGTCACCGTGCCCGCCCCTTGCAAAACTCCCGGGGGGGGGATTTTTCTATGAATCTGCATTTAATTGCCAATGAGGCAAGAGCAAATTAGTCAATCACTGACCAATAAAATGTGATTGACCCCAGGAAGCAAACACCTGTTTTGGCCACCCAGTCCCCCCCTGCACATGCTGCTCTGGGCAGGGCAGCTCCCCCATCCAATTGTATAACAATTAGCCAACCAATCAGTCTAATCAAAATCTGTATTTCCTTTTGCGATCACAGTACAACCCATTCCAAACAGCCAGTACACTGGCATCAGACCCCTATATAGAATCCTACTGCTGACAGTGGATCTTTTGACCTTATGGTTTTTAAACGGTTTGGATCGGACAGTGTCCTGGGTGCCGAATCCCAAACCAAAAAACCCCAAAATGACCCGCGGATCTCAGATCTCCAGAAGCTCTTTTCGTTTAAATGTTTAGCCTTAGCACCAGAAAAATAACGTGCCTTTGTTGTCATCCGGTGCAGTTGTCCGTATTGCACTCGGTTCTAGCTCGGCACATACAATCTGCAGTCCAATTCTGTACAGTGGATCGGAAGCTTAGGGAGAACTCATACCATCGAGCACCACCCCTCATCCACACCTTTGAACTCCTCAACTTGATGTATTAATCCGGGAATGCAGCTACCGCATCCCTTAGAGACTAGAGGGCTAATCCGTCTCGGATATTTGTCATGTGTTTTCTTGTGCTTTAATGTGGACATCTGCTGGATAGTGCCGATCCGTGCCCTACTGAGGTAGGACTGTAGGTTTTCGTTCAATGCGAGTACAGACTCCAGCCTGTCGAATCTCTGTGGCTGGATGTATAATCAAACACCACAAGAGCACTGTAAACCTGAAACGCACATGGTGGTGCGCCTTGCTAACATACAGGAGGCGGCACCAACCTCTTCTCGACCCACCGGCCATGGTGTCAGGGAAAAGAAAATGGGACTCGCGAGATCCTATTCTGAAGGCACAACATACATAATTTTGTGGAATAATCTTCCAATACTGCCCCCCTTCCCTTTCCACCCATAAATGCATGTAATCATTTCTACTGGTGGCTTAAAATGTGCATCCCTGCAAGTGAAGCACCCTGGAAGAGAGAGCCACAGGATCAGTAAACCTGGAATGACTTTCTAAGGCCGTGCATTGGTCTATTAAACCTTCACTTAACTCTATTAAACACTTCACTCCTGCTGCTCCTTAATAAGCACAACGGGTTCACACTGGTGAACGGCAGCATGGGTTCTTTTTGCGTTAAACAGAGGCCTTTAGTACATTTGGAAGGTAAGTTGGCAGGCTTTGATAAAATTCAGAGATCAACACCTTTGAACCCAGTGAAAAATGACCAGACCATTGCAGCGGTGTTCTCCGGCAGTGGTGTAGTTGTAGAACCATACCCACTGTGACACCTACTCTGGGCCCACTTGACGTGGCAGTGAACAGTCTTAAATTACCCCTGTGGATTAACAGTCATTCCTATCTCATGTCATTCTTCTATTTCAGTTTCCAACCTCTTTAAAAGGGATACAAGTTTCTGCTGTAATATTGCAGTGTGTTTTAGAGGGGTGGAAACAGGTTTTAATCAATGTCAAATGTGAACAATATTAGTTTCTGACAGGAGGGGTACAGGCTGTTAGTGAaggcaattgtattttttgttttaagtgtcaGGGCTTGTGTTTAaattgtatactttttttttttttttt

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19116 lncRNA downstream 29689 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 43271 28681838 ~ 28682338 (-) True G15364
TU19067 lncRNA downstream 273977 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 439164 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 564669 28160687 ~ 28160940 (-) True G15254
TU19205 lncRNA upstream 327508 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 463301 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 522709 29261312 ~ 29264667 (-) True G15525
TU19365 lncRNA upstream 1064292 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 1300187 30038790 ~ 30041875 (-) True G15673
AMCG00016727 mRNA downstream 206861 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016726 mRNA downstream 232993 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016725 mRNA downstream 305699 28405721 ~ 28419910 (-) True AMCG00016725
AMCG00016723 mRNA downstream 337917 28386229 ~ 28387692 (-) True AMCG00016723
AMCG00016724 mRNA downstream 367829 28350369 ~ 28357780 (-) True AMCG00016724
AMCG00016732 mRNA upstream 42874 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016736 mRNA upstream 210847 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016738 mRNA upstream 283024 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016741 mRNA upstream 453131 29191734 ~ 29201720 (-) True AMCG00016741
AMCG00016740 mRNA upstream 463269 29201872 ~ 29225587 (-) True AMCG00016740
TU18749 other downstream 1296958 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1321687 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1355470 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1446275 27268820 ~ 27279334 (-) True AMCG00016671
TU18448 other downstream 2153968 26568669 ~ 26571641 (-) False G14843
TU19143 other upstream 42869 28781472 ~ 28785507 (-) True AMCG00016732
TU19522 other upstream 1462856 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1787689 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3684455 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3758904 32497507 ~ 32503252 (-) True AMCG00016859

Expression Profile