RNA id: AMCG00016735


Basic Information

Item Value
RNA id AMCG00016735
length 804
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00016735
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 28918116 ~ 28929190 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCTCGGCGCTTCGTTTTTATGGACTCGCCGATCAATGATGACGATGAGTTCGATGTCTGATAGTTTGATTGCTTCTGATCCGTCCAAATCGGCCTTCCTGGAGTTCGGCCACGGGCTCCCCGCTCACCAGCAGCCCTCCCCCGGACTGTCTCACAACCACTACCCCGTCCACGGGCTGCACTCGGGCGGACACGCACAGCACGACGGTCCTTTCTCTCCGACCGCTGCCTCGTATGGGCGCTCGCTGGGATACCCGTACCCGAGCCCGGTGGGCAGCCACCACCCCAGCGCTTACCTCTCCTATCAGCACAACAGCCACAGCAGCACGCTGGGACACACACGGATAGAGGACACAGATCATGAGAAGTCTACAGTAATCGAGAATGGGGAAATCCGACTGAATGGCAAAGGAAAGAAGATACGGAAACCCAGAACCATCTACTCCAGTTTGCAGCTGCAGGCGCTGAACCAGAGATTCCAGCAAACCCAGTACCTCGCCCTGCCAGAGCGGGCCGACTTAGCAGCTAAACTGGGCCTGACGCAGACACAGGTTAAGATATGGTTTCAGAACAAGCGCTCCAAGTACAAGAAGATTATGAAGCATGGCTCCAGCGGACCTGAAGGGGAGCACCTCCACACCACCTCCTCCATCTCGCCGTGCTCGCCCGGCCTGCCGCAGCTCTGGGATGTCTCTATGGCGAATAAAGGCGCGCCGATGCACTCCAGTACCTACATGAACAATTTCGGACACTGGTACCCAACCCACCACCAGGAATCTCTGCCACGGGCTCAAATGATGTGA

Function

GO:

id name namespace
GO:0021559 trigeminal nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035270 endocrine system development biological_process
GO:0043010 camera-type eye development biological_process
GO:0043049 otic placode formation biological_process
GO:0048666 neuron development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K18488 DLX2; homeobox protein DLX2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19089 lncRNA upstream 156924 28757849 ~ 28761192 (+) True AMCG00016731
TU19084 lncRNA upstream 189062 28725487 ~ 28729054 (+) True G15346
TU19066 lncRNA upstream 466500 28451304 ~ 28451616 (+) True G15329
TU19065 lncRNA upstream 482860 28434984 ~ 28435256 (+) True G15328
TU18980 lncRNA upstream 687137 28225842 ~ 28230979 (+) True G15270
TU19174 lncRNA downstream 35154 28964344 ~ 29039663 (+) True G15417
TU19179 lncRNA downstream 114527 29043717 ~ 29043973 (+) True G15422
TU19181 lncRNA downstream 128496 29057686 ~ 29058167 (+) True G15424
TU19182 lncRNA downstream 136927 29066117 ~ 29066407 (+) True G15425
TU19207 lncRNA downstream 215492 29144682 ~ 29179798 (+) True G15450
AMCG00016734 mRNA upstream 141091 28762024 ~ 28777025 (+) True AMCG00016734
AMCG00016731 mRNA upstream 158656 28743360 ~ 28759460 (+) False AMCG00016731
AMCG00016730 mRNA upstream 199450 28682371 ~ 28718666 (+) True AMCG00016730
AMCG00016729 mRNA upstream 236615 28664814 ~ 28681501 (+) True AMCG00016729
AMCG00016728 mRNA upstream 257223 28658932 ~ 28660893 (+) True AMCG00016728
AMCG00016737 mRNA downstream 70471 28999661 ~ 29014142 (+) True AMCG00016737
AMCG00016739 mRNA downstream 317273 29246463 ~ 29256824 (+) True AMCG00016739
AMCG00016745 mRNA downstream 399339 29328529 ~ 29329440 (+) True AMCG00016745
AMCG00016746 mRNA downstream 440568 29369758 ~ 29371719 (+) True AMCG00016746
AMCG00016747 mRNA downstream 476925 29406115 ~ 29424802 (+) True AMCG00016747
TU18924 other upstream 812405 28104737 ~ 28105711 (+) True G15223
TU18876 other upstream 1039419 27872663 ~ 27878697 (+) True AMCG00016702
TU18835 other upstream 1086422 27829268 ~ 27831694 (+) True AMCG00016705
TU18724 other upstream 1298197 27613105 ~ 27619919 (+) False AMCG00016690
TU18717 other upstream 1319468 27588479 ~ 27598648 (+) False AMCG00016691
TU19419 other downstream 1143748 30072938 ~ 30074896 (+) False AMCG00016772
TU19422 other downstream 1152064 30081254 ~ 30083528 (+) False AMCG00016772
TU19434 other downstream 1180409 30109599 ~ 30113284 (+) True AMCG00016770
TU19453 other downstream 1307264 30236454 ~ 30236841 (+) True G15659
TU19688 other downstream 2130150 31059340 ~ 31061145 (+) True G15855

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_01603228_01604932.mRNA True 2228 mRNA 0.46 2 CI01000034 1602434 ~ 1605430 (-)