RNA id: AMCG00016738


Basic Information

Item Value
RNA id AMCG00016738
length 488
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00016738
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29021627 ~ 29024518 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTGGGCAGCTGAGCGGCTCAGGAGGGAGATATGAGCAGAGGGAGCTGGGCTTATTTGCTCCAAGTCGAGTGGTTAAGAAGCTACTGCAATCGGCCGGGTGCAGTATGGGGCAGATGCAGCAGGGGGCTGATCTCTTGCCCTCTCACCTGTCTGCAGGTAGCAAGCAATTGGGATTGGTGTGGAATGGACAGAGGCTCAGCTGATtgttggagagagagggaaacaaacatttgcattaaaactgtGGCTGCAGTGGTGTGGAAGTCCTGGTGCTGTGGAACCCCcaactttgtattgtttttcagctTGCTGGTGGTTGGAGGTGTGTTTGGAGGTCTTTCCCCCTCCCAGGCTGTTGGAGAGGATCTCTTCAGTTGAAGGAGACTGCAGAGTGTgactaacatttgttttccattatgaATTTGCTCTGCTCCGCTCCTCTCCCTTTTCTGTTGGCTGAAATAAAATTATGTGAAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19116 lncRNA downstream 325707 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 339289 28681838 ~ 28682338 (-) True G15364
TU19067 lncRNA downstream 569995 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 735182 28284362 ~ 28286445 (-) True G15291
TU18959 lncRNA downstream 860687 28160687 ~ 28160940 (-) True G15254
TU19205 lncRNA upstream 41593 29066111 ~ 29066388 (-) True G15448
TU19222 lncRNA upstream 177386 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 236794 29261312 ~ 29264667 (-) True G15525
TU19365 lncRNA upstream 778377 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 1014272 30038790 ~ 30041875 (-) True G15673
AMCG00016736 mRNA downstream 67831 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016732 mRNA downstream 236128 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016733 mRNA downstream 283024 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016727 mRNA downstream 502879 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016726 mRNA downstream 529011 28477514 ~ 28492616 (-) True AMCG00016726
AMCG00016741 mRNA upstream 167216 29191734 ~ 29201720 (-) True AMCG00016741
AMCG00016740 mRNA upstream 177354 29201872 ~ 29225587 (-) True AMCG00016740
AMCG00016743 mRNA upstream 241241 29265759 ~ 29288483 (-) True AMCG00016743
AMCG00016742 mRNA upstream 288870 29313388 ~ 29322785 (-) True AMCG00016742
AMCG00016744 mRNA upstream 331674 29356192 ~ 29362007 (-) True AMCG00016744
TU19143 other downstream 236120 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 1592976 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1617705 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1651488 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1742293 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 1176941 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1501774 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3398540 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3472989 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 3472989 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile