RNA id: AMCG00016741


Basic Information

Item Value
RNA id AMCG00016741
length 1395
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00016741
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29191734 ~ 29201720 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTGCTGCACCATGCCAGTCCAAGGGGCAGGAAAGCAAGCCTCTCCTTCTTTCTCGCCAGCTATGCCAAGATCGATCACTTGCAATCATGATATATAAGCTGACTATCGTGGGGTAAAAAATGTGTTGTACCCTGACagacttttttgtgtgtgggaaGAATAAAGTAGGATACCTCTAACGGAAACCACTTATTATAGTAGCAAAGGAAGCCAGGGGGCAGCTGttgtctgttgtttgtttgtttatttgtttttaaaaaccatGTATTGTAAGGTCTGTACACGGTAATATTTACTTACAACTGTAGATGCCCGCCAAGGGACTGAGAAGTATAAAACACGGACCATGTTTAAGAGGCTGACCACGAGCATTGTGAAAGAGCTGGACACTCAGGGGGAACTACAGCCAGCCTGGAGTATCTACGAGAACCACAACCTCGACCTGCTGTATCTCTTGAAAAAGACTGTGTGCCCCAAGTGGGTCATCTTTAAAAAGAGCAAGTTTCAACCCACTGGGGTGAAGCTGGAATCTCTGCTGTGCCATGGGGACACTGTGGATATAGGGAAGAGGCAGGACAGTGTTGCCAGGATGTCGGTGAAGCACCACGGCAGCACAGACCTGAACTCTGCTGTTGCAGGTGGCGGGGTGGAGGCAGAGGCCCAGCTGAACATGGGCCACACCCACACAGTGGGCAACACTGACATGGAGAGGGGGAGGGGCAGTACGAGGCTGACAAAATCACTCCTCATCAAATTTAACGTCAACCACTGGCTGCTGAGGAGCCTGCAGAACTCCAAAGTGACTGGGCTGTATGTGATCTACGAGGTCCTAAGAGCCAAGAACACTATAAACCTGGAGCAAAGAAGAGCGATGGAGGATTTGGCATCTGACACACTTGATTTCCCCGCATTGAAGCGGCAGGTCCAGAAAGAGTTTGCAGAGTTCGAGAACCTGGATAAGTGCGCAAGAAAGGACATCTGGGGTGTGCtgtctaaaataataatgtgtgacCAGGCCCTGACCGCTCTGGATTACATTGGGAACAGAGGCTCGGTCCAGGAGCTGCTGAGGCTTGTGGGACTTGACCCATCTGATGCTCCTGACCCCAACGAGCTCATGGCCCCTTTTAATCTCCTGGTCAATGCGTTCATTGAGCTGGAGGGCACAGCCACGAATTTGATCTGCAGCCTGAACACAGATGATTGCCATAAACAGCTGAAGCTGTTTCCAGAGGACAGTGTTCGCCTGGCAGGGGAGCTGCTGGAGGCCTGCGGACTGCAGCTGAGCGAACAGAGGCTGGACCCCAGCCTGGGGACACCAGGCAGCCCCGACCTCTCCCTGCTCTCCTTTTACATTGCCCTGCAAGGCCTGGACAGGCTACTGGAGCAATGA

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19205 lncRNA downstream 125346 29066111 ~ 29066388 (-) True G15448
TU19116 lncRNA downstream 495814 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 509396 28681838 ~ 28682338 (-) True G15364
TU19067 lncRNA downstream 740102 28451398 ~ 28451632 (-) True G15330
TU19002 lncRNA downstream 905289 28284362 ~ 28286445 (-) True G15291
TU19222 lncRNA upstream 184 29201904 ~ 29208644 (-) False AMCG00016740
TU19300 lncRNA upstream 59592 29261312 ~ 29264667 (-) True G15525
TU19365 lncRNA upstream 601175 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 837070 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA upstream 838075 30039795 ~ 30041875 (-) False G15673
AMCG00016738 mRNA downstream 167216 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016736 mRNA downstream 237938 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016732 mRNA downstream 406235 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016733 mRNA downstream 453131 28725609 ~ 28738603 (-) True AMCG00016733
AMCG00016727 mRNA downstream 672986 28509826 ~ 28518748 (-) True AMCG00016727
AMCG00016740 mRNA upstream 152 29201872 ~ 29225587 (-) True AMCG00016740
AMCG00016743 mRNA upstream 64039 29265759 ~ 29288483 (-) True AMCG00016743
AMCG00016742 mRNA upstream 111668 29313388 ~ 29322785 (-) True AMCG00016742
AMCG00016744 mRNA upstream 154472 29356192 ~ 29362007 (-) True AMCG00016744
AMCG00016748 mRNA upstream 170932 29372652 ~ 29405744 (-) True AMCG00016748
TU19143 other downstream 406227 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 1763083 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1787812 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1821595 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1912400 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 999739 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1324572 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3221338 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3295787 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 3295787 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile