Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00016742 |
| length | 1396 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 12 |
| gene id | AMCG00016742 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 29313388 ~ 29322785 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0048863 | stem cell differentiation | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0043248 | proteasome assembly | biological_process |
| GO:0022624 | proteasome accessory complex | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| K03036 | PSMD11, RPN6; 26S proteasome regulatory subunit N6 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU19300 | lncRNA | downstream | 48721 | 29261312 ~ 29264667 (-) | True | G15525 |
| TU19222 | lncRNA | downstream | 104744 | 29201904 ~ 29208644 (-) | False | AMCG00016740 |
| TU19205 | lncRNA | downstream | 247000 | 29066111 ~ 29066388 (-) | True | G15448 |
| TU19116 | lncRNA | downstream | 617468 | 28695698 ~ 28695920 (-) | True | G15365 |
| TU19115 | lncRNA | downstream | 631050 | 28681838 ~ 28682338 (-) | True | G15364 |
| TU19365 | lncRNA | upstream | 480110 | 29802895 ~ 29807133 (-) | True | G15585 |
| TU19476 | lncRNA | upstream | 716005 | 30038790 ~ 30041875 (-) | True | G15673 |
| TU19477 | lncRNA | upstream | 717010 | 30039795 ~ 30041875 (-) | False | G15673 |
| TU19480 | lncRNA | upstream | 719790 | 30042575 ~ 30044565 (-) | True | G15675 |
| TU19499 | lncRNA | upstream | 786668 | 30109453 ~ 30113284 (-) | True | G15690 |
| AMCG00016743 | mRNA | downstream | 24905 | 29265759 ~ 29288483 (-) | True | AMCG00016743 |
| AMCG00016740 | mRNA | downstream | 87801 | 29201872 ~ 29225587 (-) | True | AMCG00016740 |
| AMCG00016741 | mRNA | downstream | 111668 | 29191734 ~ 29201720 (-) | True | AMCG00016741 |
| AMCG00016738 | mRNA | downstream | 288870 | 29021627 ~ 29024518 (-) | True | AMCG00016738 |
| AMCG00016736 | mRNA | downstream | 359592 | 28949450 ~ 28953796 (-) | True | AMCG00016736 |
| AMCG00016744 | mRNA | upstream | 33407 | 29356192 ~ 29362007 (-) | True | AMCG00016744 |
| AMCG00016748 | mRNA | upstream | 49867 | 29372652 ~ 29405744 (-) | True | AMCG00016748 |
| AMCG00016749 | mRNA | upstream | 101811 | 29424596 ~ 29445568 (-) | True | AMCG00016749 |
| AMCG00016750 | mRNA | upstream | 187911 | 29510696 ~ 29513992 (-) | True | AMCG00016750 |
| AMCG00016752 | mRNA | upstream | 304099 | 29626884 ~ 29627432 (-) | True | AMCG00016752 |
| TU19143 | other | downstream | 527881 | 28781472 ~ 28785507 (-) | True | AMCG00016732 |
| TU18749 | other | downstream | 1884737 | 27424893 ~ 27428651 (-) | True | G15076 |
| TU18738 | other | downstream | 1909466 | 27401676 ~ 27403922 (-) | True | G15067 |
| TU18673 | other | downstream | 1943249 | 27369590 ~ 27370139 (-) | True | G15026 |
| TU18636 | other | downstream | 2034054 | 27268820 ~ 27279334 (-) | True | AMCG00016671 |
| TU19522 | other | upstream | 878674 | 30201459 ~ 30202351 (-) | True | G15706 |
| TU19613 | other | upstream | 1203507 | 30526292 ~ 30529500 (-) | True | G15787 |
| TU20184 | other | upstream | 3100273 | 32423058 ~ 32423438 (-) | True | G16247 |
| TU20188 | other | upstream | 3174722 | 32497507 ~ 32503252 (-) | True | AMCG00016859 |
| TU20192 | other | upstream | 3174722 | 32497507 ~ 32498895 (-) | False | AMCG00016859 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00051791 | False | 4900 | mRNA | 0.37 | 13 | NC_007114.7 | 34801146 ~ 34816979 (-) |
