RNA id: AMCG00016743


Basic Information

Item Value
RNA id AMCG00016743
length 2422
RNA type mRNA
GC content 0.57
exon number 21
gene id AMCG00016743
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29265759 ~ 29288483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACTATGCAAGCAGCCCGATGCCCGACAGACGACCTGTCGCTGACTAACTGTGCCGTGGTGAGCGAGAAGGATCTGCAGTCTGGCCAACATGTGACTGTGAAGACCACCAGCACCCACAAGTTTGTCTTCACTGTGAAGACCCACCACTCTGTTGTTCCTGGCACCATCGCTTTCAGCCTGCCCCAGAGGAAGTGGGCTGGACTCTCCATCGGTCAGGAGGTGGAAGTGGCTGCGTACACCTTCGACAAGTCCAGGCAGTGTACCGGCACCATGACGATCGAGATCGACTTCCTGCAGAAGAAGAACATCGACACCAGCCCCTACGACTCTGACAAGATGGCTGGGGAGTTCATCCAGCAGTTCAACAACCAGGCCTTCACTGTGGGGCAGCAGCTAGTGTTCAGCTTCTGTGACAAGCTGTTCGGTCTGCTTGTGAAGAGCATCGAGGGCATGGATCCCAGCATTCTCAAGGGGGAGCCAGCATCAGGCAAGAAGCAAAAGATCGATATCGGCCTAGTCATCGGGAACAGCCAGGTGATCTTTGAGAAAGCCGAGAGCTCCTCTCTGACTCTAGTCGGCAAGGCCAAGACCAAGCAGGACCGCCAGTCCATCATCAACCCCGACTGGAACTTCGAGCGCATGGGCATCGGCGGCCTGGACAAGGAGTTCTCTGACATCTTCAGGAGAGCCTTCGCCTCCCGCGTCTTCCCCCCTGATATCGTGGAGCAGATGGgctgtAAGCACGTCAAGGGCATCCTGCTGTATGGCCCCCCTGGTTGTGGTAAGACCCTAATGGCCCGGCAGATCGGGAAGATGCTCAACGCGCGTGAGCCCAAGGTGGTGAACGGCCCCGAGATCCTCAACAAATATGTGGGCGAGTCCGAGGCCAACATCCGCAAGCTGTTCGCCGACGCTGAAGAGGAGCAGAAGAGGctggGGGCCAACAGTGGGCTCCACATCATCATCTTTGACGAGATCGATGCCATCTGCAAGCAGAGGGGCAGCATGGCCGGCAGCACAGGCGTCCATGACACCGTGGTCAACCAGCTACTGTCCAAGATTGACGGAGTGGAGCAGCTCAACAACATCCTGGTCATAGGAATGACCAACAGGCCCGACCTGATTGACGAGGCTCTGCTAAGACCTGGCCGTCTGGAGGTCAAGATGGAAATAGGCCTGCCGGATGAGAAGGGCCGAGTGCAGATCCTGCACATCCACACTGCCAAGATGAGGGAGTTTAACCTGCTGGCCGGGGACGTGGACATCCAAGAGCTGGCAGTGGAGACCAAGAACTACAGTGGCGCCGAGCTGGAGGGGCTGGTCCGAGCCGCCCAATCCACCGCCATGAACCGCCACATCAAGGCCAGTAACAAAGTGGAGGTAGACATGGAGAAGGCCGAGAAGCTGCAGGTGCGGCGTGGGGACTTCATGGCCTCTCTGGACAATGACATCAAACCCGCCTTTGGCACCAACCAGGAGGACTACGCTAGCTTCATCATGAATGGCATCATCAAGTGGGGCGACCCAGTGACCCAGGTCCTGGATGACGGAGAGCTGCTGGTTCAGCAGACCAAGAACAGTGACCGCACCCCCCTGGTCAGCGTGCTACTGGAGGGTCCTCCTCACAGTGGGAAGACGGCCCTGGCCGCTAAGATCTCCGAGCAGTCCGAGTTCCCCTTCATCAAGATCTGCTCCCCAGAAAAGATGATTGGCTTCTCTGAGATCGCAAAGTGCCAGGCCATCAAGAAGGTGTTCGATGATGCGTATAAATCCCAGCTGAGCTGTGTGGTGGTGGATGACATTGAGCGTCTGCTAGACTACGTTCCTATTGGACCCCGCTTTTCCAATCTGGTCCTCCAGGCTCTGCTGGTGCTGCTGAAGAAGGCCCCCCCTCATGGCCGCAAGCTGCTGATCATTGGGACCACAAGCCGCAAGGATGTCCTGCAGGAGATGGAGATGCTAGACGCCTTCAGTACCACTATCAACATCCCTAACATCTCCTCTGGGGAACACCTCATCGAGGCCCTGGAGCTTCTGGGCAACTTCAAGGACAAAGAGCGGGCCATCATCGCCCAGCATGTCAAGGGCAAGAGGGTATGGATCGGCATCAAGAAGCTGCTGATGCTCATTGAGATGTCTCTGCAGatggATCCGGAGCACAGGGTCAGCAAGTTCCTGGCTCTGCTGAGGAATGAGGGCGCGTATGATGATTCCAATCACATCAGAATTTAGCCCCCTTCCCTCGGTGTATCCCCAGCTGATGCAGTCGCTCATGaaACTCAACGCACTGAGAGCTGAGCCAAGTCAGTCTCCAGTCACCTCTACATCCCCTACACTGCCAGCCCTGCAGACCACCCTCAACCCCCACTACATCACATACTCCAGCTCTCAGGACCAAATCGTGGTTATAACCATCTAG

Function

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0021854 hypothalamus development biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0048592 eye morphogenesis biological_process
GO:0051875 pigment granule localization biological_process
GO:0014044 Schwann cell development biological_process
GO:0048914 myelination of anterior lateral line nerve axons biological_process
GO:0048929 efferent axon development in posterior lateral line nerve biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0048933 afferent axon development in posterior lateral line nerve biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K06027 NSF, SEC18; vesicle-fusing ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19300 lncRNA downstream 1092 29261312 ~ 29264667 (-) True G15525
TU19222 lncRNA downstream 57115 29201904 ~ 29208644 (-) False AMCG00016740
TU19205 lncRNA downstream 199371 29066111 ~ 29066388 (-) True G15448
TU19116 lncRNA downstream 569839 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 583421 28681838 ~ 28682338 (-) True G15364
TU19365 lncRNA upstream 514412 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 750307 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA upstream 751312 30039795 ~ 30041875 (-) False G15673
TU19480 lncRNA upstream 754092 30042575 ~ 30044565 (-) True G15675
TU19499 lncRNA upstream 820970 30109453 ~ 30113284 (-) True G15690
AMCG00016740 mRNA downstream 40172 29201872 ~ 29225587 (-) True AMCG00016740
AMCG00016741 mRNA downstream 64039 29191734 ~ 29201720 (-) True AMCG00016741
AMCG00016738 mRNA downstream 241241 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016736 mRNA downstream 311963 28949450 ~ 28953796 (-) True AMCG00016736
AMCG00016732 mRNA downstream 480260 28781477 ~ 28785499 (-) False AMCG00016732
AMCG00016742 mRNA upstream 24905 29313388 ~ 29322785 (-) True AMCG00016742
AMCG00016744 mRNA upstream 67709 29356192 ~ 29362007 (-) True AMCG00016744
AMCG00016748 mRNA upstream 84169 29372652 ~ 29405744 (-) True AMCG00016748
AMCG00016749 mRNA upstream 136113 29424596 ~ 29445568 (-) True AMCG00016749
AMCG00016750 mRNA upstream 222213 29510696 ~ 29513992 (-) True AMCG00016750
TU19143 other downstream 480252 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 1837108 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1861837 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1895620 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 1986425 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 912976 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1237809 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3134575 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3209024 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 3209024 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051788 False 3184 mRNA 0.46 21 NC_007114.7 34766989 ~ 34801041 (-)
grasscarp (Ctenopharyngodon idella) CI01000063_03667811_03688065.mRNA True 2240 mRNA 0.48 17 CI01000063 3667541 ~ 3688065 (-)