RNA id: AMCG00016744


Basic Information

Item Value
RNA id AMCG00016744
length 729
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00016744
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29356192 ~ 29362007 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGTACAAACGGATGCGTGCCACCGTCACCATTATCCGTGCGTACCGGCGCTACAAGGTTAAGTCCTACATCCGTGAAGTTGCCCGCCGCTTCCAGAACGTCCGCAGCATGAAGGATCATGGGAGACATGTCAAGTGGCCCACACCGCCCAAGGTCCTGCGCAAGTTTGAGGAGGCCCTGCAGAATATCCACAAGAGGTGGTGGGCGTGGTCTCTGATCAAGACCCTGCCCCCTGAGGACCTGCCCCAGCTGAGGGCAAAGGCTGCATCCATGGAGTGTCTGAAGGGTCAGAGAGCAGACCTGGGCCTGCAGAGAGCTTGGGAGGGCAACTACCTGAAGCGAGACAGCCCGGAGACGGCCTCCCACTTCACTATGGTGTGCAACGAGCTGCAGCGCAAGGACAAGTTCATGCGGGTCCTCTTCTCTTGTCACGTGCGCAAGATTAACCGCTTCCACAAGGCTCAGGACCGTGCGGTGTTGGTCACTGACCGGCATCTTTATAAGATGGACCCTCTGAAGCAGTACAAGCCCATGAAGAGCATCCCCCTCTACAATGTGACTGGTCTCAGTGTGTCTTCAGGGAAGGATCAGCTGGTGGTGTTCCATACCAAAGATAGCCGGGACCTCATCGTGTGTCTGAAGGGAATGATGCCCGTAGGGGAGAGCCGCATCGGGGAGCTCGTGGGCACTATGGTCAGCCACTTCAAAAGGTACAGCACACGCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19300 lncRNA downstream 91525 29261312 ~ 29264667 (-) True G15525
TU19222 lncRNA downstream 147548 29201904 ~ 29208644 (-) False AMCG00016740
TU19205 lncRNA downstream 289804 29066111 ~ 29066388 (-) True G15448
TU19116 lncRNA downstream 660272 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 673854 28681838 ~ 28682338 (-) True G15364
TU19365 lncRNA upstream 440888 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 676783 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA upstream 677788 30039795 ~ 30041875 (-) False G15673
TU19480 lncRNA upstream 680568 30042575 ~ 30044565 (-) True G15675
TU19499 lncRNA upstream 747446 30109453 ~ 30113284 (-) True G15690
AMCG00016742 mRNA downstream 33407 29313388 ~ 29322785 (-) True AMCG00016742
AMCG00016743 mRNA downstream 67709 29265759 ~ 29288483 (-) True AMCG00016743
AMCG00016740 mRNA downstream 130605 29201872 ~ 29225587 (-) True AMCG00016740
AMCG00016741 mRNA downstream 154472 29191734 ~ 29201720 (-) True AMCG00016741
AMCG00016738 mRNA downstream 331674 29021627 ~ 29024518 (-) True AMCG00016738
AMCG00016748 mRNA upstream 10645 29372652 ~ 29405744 (-) True AMCG00016748
AMCG00016749 mRNA upstream 62589 29424596 ~ 29445568 (-) True AMCG00016749
AMCG00016750 mRNA upstream 148689 29510696 ~ 29513992 (-) True AMCG00016750
AMCG00016752 mRNA upstream 264877 29626884 ~ 29627432 (-) True AMCG00016752
AMCG00016751 mRNA upstream 270271 29632278 ~ 29650858 (-) True AMCG00016751
TU19143 other downstream 570685 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 1927541 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1952270 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 1986053 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 2076858 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 839452 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1164285 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3061051 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3135500 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 3135500 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile