RNA id: AMCG00016748


Basic Information

Item Value
RNA id AMCG00016748
length 2166
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00016748
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 29372652 ~ 29405744 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGAACACGAGAGTCTGGAGTTCGGCAAGGCGGACTTCGTGCTGCTGGACACCGTCTCCCTGGAGGAGTTCATGGCCAACCTCAAGCTCAGAGAATCTCCCTTTCTCCTCCCCTGCCCCCTCACTCCCTCTCCTGACTGTAGGTTCGAGAAAGGACGGATCTACAGCTACATCGGGGAGGTGGTGGTGTCGGTGAATCCCTATCGCGCCATGAACATCTACGGGCGGGACACCATTGAACAGTACAAGGGCCGCGAGCTGTACGAGAGGCCCCCGCACCTCTTTGCCATCGCTGACGCGGCCTATAAAGCCATGAAGAGGAGGAACAAAGACACCTGCATTGTCATCTCAGGGGAGAGTGGTGCTGGGAAGACGGAAGCCAGTAAATACATCATGCAGTACATCGCTGCTATCACCAACCCCAACCAGAGAGCGGAGGTGGAAAGGGTGAAGAACATGCTACTGAAATCCAACTGCGTCCTGGAGGCTTTTGGGAATGCCAAGACCAACCGCAATGACAACTCCAGCCGCTTTGGGAAGTACATGGACATCAACTTCGACTTCAAGGGTGACCCCATTGGGGGGCACATCAACAACTACCTGCTGGAAAAGCTGGTGAAGGGGGGCCCGGAGCAGCTGCTGCGCTCGCTACACATCCAGAAGGACCCCAACGTCTACAGTTACATCAAAGTGGGCGGGCAGATCAAGTCATCCATCAATGATAGCGCTGACTTCAAGGCTGTGGCCGATGCCATGAAGGTGATCGGCTTCACCTCCGAGGAGCTCCAAACTGTCTACAAGATCCTGGCCACCATTCTACACCTGGGCAACATGAAGTTCGGCAGCGACGGGGACGTGACGCTGATCGAGAACAGCAAGCTTGTGTCTGTGCTGGGCGACCTGCTGGCCACCAAGCAGGAGAACGTGGAGAAGGCCCTGCTCTACCGCACTGTGGCCACCGGCCGTGACATCATCGAcaaacagcacactgcacaagAGGCCAGCTACGGCCGCGACGCCTTGGCCAAGGCCATTTACGAGCGTCTCTTCTGCTGGATTGTGGGAAGGATCAACGATGTCATTGAGGTGAAGAATTACGACGCCAAAGTTCACGGCAAGAACACGGTGATCGGTGTGCTGGATATCTACGGGTTTGAGATCTTCGAGAACAACAGTATAATCCCATTTGAGATCGATTACTTCAACAACCAGATAATTGTGGACCTGGTAGAGCAGCAGCACAAGGGCATCTTCTCCGTGCTGGACGAGGCCTGCATGAACGTGGGCAAGGTGACCGACGAGATGTTCCTGCAGGCACTCAACGGCAAGCTGGCCAAACATGCCCACTTCACCAGCCGCAAGGTGAGGACTACCTCCTGTCCCTGCCTTAAAGTGGTCGAActgcaaggaaaacaaatgccaaCACATGCCAAAATGTTCCCCTTCAAGCCTCTGCCCCTTCTCTTGATTAGTCCTTCAGTCAGCCGTGTAAAACTTCAGCATTGGGAGGTGACTGTGTTGCCCGTGGAGGCTCGCATGGAAGCGGGAGAGCTTCTTCCCACTGACAAGAGCCTGGAGTTCAACCGTGATTTCCGTATTCAACACTACGCCGGCACTGTGGTGTACTCTGTGTTGGGGTTCATTGACAAGAATAAGGACACACTGTTCCAGGACTTCAAACGCCTTCTCTACAATAGCTCTAACCCAGTCCTGAAGGCCATGTGGCCAGAGGGGAAGCTCAGCATCACTGAGGTGACCAAACGCCCCCTGACGGCTGCCACGCTCTTCAAGAACTCCATGATCTCATTGGTGGAGAATCTGGCATGCAAGGAGCCCTATTACGTACGCTGCATCAAACCCAATGACGTGAAGTCCCCGCTGCTTTTCGAGTACGAGCGATGTCGCCACCAGGTGGAGTACCTGGGGCTGCTGGAAAACGTGCGAGTTAGGCGTGCCGGCTACGCCTACAGACAGACATACCCCCGCTTCCTGCAGAGGTACAAGATGATCTCGGAGTTCACATGGCCCAACCACGACCTGCCGTCGGACCGGGAGGCAGTGAAGAAGCTGCTGCAGGGCTGTGGATTCGAGCATGACGTTGCGTATGGCAAGACCAAGGTGTTTGTACGCACGCCACGCACCCTGTTCACTCTGGAGCAGCAG

Function

GO: NA

KEGG:

id description
K10356 MYO1; myosin I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19300 lncRNA downstream 107985 29261312 ~ 29264667 (-) True G15525
TU19222 lncRNA downstream 164008 29201904 ~ 29208644 (-) False AMCG00016740
TU19205 lncRNA downstream 306264 29066111 ~ 29066388 (-) True G15448
TU19116 lncRNA downstream 676732 28695698 ~ 28695920 (-) True G15365
TU19115 lncRNA downstream 690314 28681838 ~ 28682338 (-) True G15364
TU19365 lncRNA upstream 397151 29802895 ~ 29807133 (-) True G15585
TU19476 lncRNA upstream 633046 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA upstream 634051 30039795 ~ 30041875 (-) False G15673
TU19480 lncRNA upstream 636831 30042575 ~ 30044565 (-) True G15675
TU19499 lncRNA upstream 703709 30109453 ~ 30113284 (-) True G15690
AMCG00016744 mRNA downstream 10645 29356192 ~ 29362007 (-) True AMCG00016744
AMCG00016742 mRNA downstream 49867 29313388 ~ 29322785 (-) True AMCG00016742
AMCG00016743 mRNA downstream 84169 29265759 ~ 29288483 (-) True AMCG00016743
AMCG00016740 mRNA downstream 147065 29201872 ~ 29225587 (-) True AMCG00016740
AMCG00016741 mRNA downstream 170932 29191734 ~ 29201720 (-) True AMCG00016741
AMCG00016749 mRNA upstream 18852 29424596 ~ 29445568 (-) True AMCG00016749
AMCG00016750 mRNA upstream 104952 29510696 ~ 29513992 (-) True AMCG00016750
AMCG00016752 mRNA upstream 221140 29626884 ~ 29627432 (-) True AMCG00016752
AMCG00016751 mRNA upstream 226534 29632278 ~ 29650858 (-) True AMCG00016751
AMCG00016758 mRNA upstream 295672 29701416 ~ 29714465 (-) True AMCG00016758
TU19143 other downstream 587145 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 1944001 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 1968730 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 2002513 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 2093318 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 795715 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 1120548 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 3017314 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 3091763 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 3091763 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010336 True 6701 mRNA 0.41 22 NC_007123.7 28377745 ~ 28537615 (-)
grasscarp (Ctenopharyngodon idella) CI01000063_07147043_07192035.mRNA True 4574 mRNA 0.47 27 CI01000063 7146006 ~ 7192035 (-)