RNA id: AMCG00016768


Basic Information

Item Value
RNA id AMCG00016768
length 3090
RNA type mRNA
GC content 0.58
exon number 20
gene id AMCG00016768
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30019515 ~ 30036042 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTTCCCTGTGAACCTGAAGGTGAATTTTAAGGGACGGGCGGAGAGTTTCCTAGTTTCGGACTCGGAAAGGACGAGCTGGGAGTCGGTGGAAGACATGgtcaagattttgtttcagttgaGCACAGTGCAAGTGAAATACTTTGACGAGGACAACGAAGAGGTTTCAATCAACAGTCAGGAGGAATACGAAGAAGCTTTGAAGAGTGCAATGAAGCAAGGAAACCAGCTTCACATGAATGTATATGAGGTGAAGGAGGCTGGAAGGAGAGCCTGTGAGAGCACAGCAGTAAACAGAGACTGCACTGTGGTGAAGATCACCGACAGCCCTGCACAGCATGCATCACCTCCAGCTAACCCTGCTGCACAGAGCTTGCAGCCTGCAGCCACAGACGAGGAAATGgtGGTAATAAAAGAATTCCTGGTAGACCAAGAGGATGAACACATCCCCCCAGCATGGTTCACCTCATACATGGCAAAGTTTAAGGACCAAGTGGTGAAGGAGGCTGTGGAGAAGATCTGCCTTGAATTCTCAGAGCGCTTCTGCCTCCAGAAGCAGCAGCAGGTCCCCCCTCCGGAGCCAGCCGGCATGGCCACCCAGGTGCCCGAGATCAGCTCCACGGCCACACACCCAGACGGCCGGCTATCCCCCTGCCAGGCCTGTCTAGGCTGCACCACGGGGGTATACCAATGCAGTGTTTGCCCATCCTACACTTTATGTGAGCTGTGCAGCTTCCAGCATGACCCCAGCCACTCCTTGGTGAAACTCAGGACTGCTGTGCCACTCGGGGAATACGGAGAACCAGTAGTAGTGGAACAAAGGTTTCAGAAGCGGATGGACAGGAGCTTCCGGAAAGCAGAGAAGCAGAGACTGAAGGCAGAGAAGAGGCAGCTGAAGGCCGAAGTCAAGGAGATCAAGAAGCAGCTGAGGATGGAGCGCCGGAGCCTCCAGTGGAGTTCAGCTAGCGACGGGGCCGGCGAGCCCGTGCTGCTGCAGCCCAGAGGGACACCTGCCAGCCAGCCAGAGAGCCCAAAGCAGTCCTGCACTCCCGTGGTGCCCACCATGACGGCTGTGTTCCTGGATGAGAACCTGCCTGACGGTACTCGGCTCCAGCCCGGCACCAGGTTCATCAAGTACTGGAGGATGAGAAACACTGGAACAGTCAGCTGGACCTCAGACACCAAGCTCAAGTTCATGTGGGGGAACCTGGACCTGGCAACCAGTGAGAAGAAGGAGGTGGCCGTGCCATTTCTGCAGCCAGGGCAGGTGGGGGTGGTGTGTGTGGAGTTTGTGGCCCCGGTGTTAGAGGGCACCTACACTTCGCACTGGCGGCTGGCCCACCGGGGGGAGCAGTTTGGACCCAGGGTGTGGTGCAGCATCGTGGTGGACCCCCTCCAATCTGCTGACTACACTGATTTACAACTCACCATGCCCTGCAGCCAATTACAGGCAAGTGGAAAGGAATTCTGCTCTGATGTGGAGCAACCCCACTCATCCCACAAAGAGGACATGTGCTGCTCAGGAATGGGTCTCACACCCCAGGAATCCAAGATCCTGTATGAGGACCGAGATCAGGATTATTACATCCCCTCAGTGGATCTGCTAACTGCACAGGACCTGCTTTCTTTTGAGCTGCTGGACATTAACATAGTGCAGGAACTGGAACGGGTGCCTCACAACACGCCAGTTGGTAAGGGTGGTTGCCTGTACAGAGCTTGTGATTTGGAGGCGCATGTGGTGGTAATGAACAATGATTTcaaattgattatttgtttccttgtttctcCTGCAGACATGACTCCCTGCATGTCCCCTCTGCCCCACGACGGGCCGCTGCTGGAGAAGCCCGGGCTGGGGCTGATTGAGGAGGAGGCCGAGAGCTCGGGGTTGAAAACTCTGCTGGATGTGAGTCCCGGAGGGCAGCAGGAGATGGAGGGAGCGCCCGCCCAGGAGGAAGGAGACGAAGACATCAGTGGGAcccagtttgtgtgtgagaCGGTGATCCGCTCCCTGACCCTGGAGGAGGCCCCTGACCACAAGCCGCTGCGCAGGAGGCCTGGCTCCCAGAAGACTTCCTATCCGGTGCACCAGGACATCTTCTCCTGCGCTGAGAGGTCTGGGGAGCAGCCCAGCGAGAGGAGAGCCCTGCCAGTTGTGGACGTGGAAGTCAAGAGTGTGATGGTGCCGGTCCAGGCAGTGCAGGAAGACCGGCCACAGACAGAGGAGTGCCCCGAGTCCGACAGTGAAAGTATCTGCGTGGAGGCCGGGTCCGAGAGAGGGGGGGACGAGGAGTTGCCGCAGGACGACCGAGATGAGGTGCGCAGCCAGGGCTCCTCCACGTCCTCCGAGGATTACATCATCATCTTGCCGGACTGCTTCGACACCAGCCGCCCACTGGGGGAGTCCATGTACAGCTCGGCCTTGTCCCAGCCTGGTGCCGGGGGGGCTGTGGAGTCGGACCTGGATGCAGAGCAGCTGTGCCTCAGCTCCCCTGAGGAAGAGGACCTGACGCTAGGTCACAGCGTGAACGACATGCTCTGTGCTTCGCAGACACTGGACACTGTGCCCCTCACCCCTGAGGTGGTGCCCACGCCCGCCCAGCTGCAGCTGACATCAGGGACCCCAACACTCAGAGGAGAGGGGCCTGCTCACCACAGAGACCATAATGAGACAGAGCTGGCGGTCGAGGCTCTGCCCTCACCCGAGCTGTACAGGGAGGAAGCAGTTGAAGGCTCCAGTCCTGTGCAGTCGCTACCAGTCAGCCCCTGTGGAAACACCATCTCAAGACAACACAGTAGCCAAGATCTCAGGCCCCATGGCGGTATAGCAGGGGGGCTGGTTAAGGGAGCCCTGTCGGTTGCGGCCTCTGCCTACAAAGCCCTGTTCACTGGACAGCCTGTCCCAGCACAGCCTCCTGTAGACTCTGCCAATCAGCAGGCCACTATGATGGCTGTGCTCCTGGAGATGGGCTTCGGGGACCGGCAGCTCAACCAGCGGCTGCTGAAGAAACACAACTACAACCTGCTCGATGTGGTGAACGAGCTGGTGCAGCTGACTGACAACGACTGGTACTCTGCCCGCTACTGA

Function

GO: NA

KEGG:

id description
K17987 NBR1; next to BRCA1 gene 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19365 lncRNA downstream 212382 29802895 ~ 29807133 (-) True G15585
TU19300 lncRNA downstream 754848 29261312 ~ 29264667 (-) True G15525
TU19222 lncRNA downstream 810871 29201904 ~ 29208644 (-) False AMCG00016740
TU19205 lncRNA downstream 953127 29066111 ~ 29066388 (-) True G15448
TU19116 lncRNA downstream 1323595 28695698 ~ 28695920 (-) True G15365
TU19476 lncRNA upstream 2748 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA upstream 3753 30039795 ~ 30041875 (-) False G15673
TU19480 lncRNA upstream 6533 30042575 ~ 30044565 (-) True G15675
TU19499 lncRNA upstream 73411 30109453 ~ 30113284 (-) True G15690
TU19524 lncRNA upstream 168780 30204822 ~ 30205115 (-) True G15708
AMCG00016767 mRNA downstream 5580 30008137 ~ 30013935 (-) True AMCG00016767
AMCG00016766 mRNA downstream 22658 29993530 ~ 29996857 (-) True AMCG00016766
AMCG00016762 mRNA downstream 114859 29893213 ~ 29904656 (-) True AMCG00016762
AMCG00016758 mRNA downstream 305050 29701416 ~ 29714465 (-) True AMCG00016758
AMCG00016751 mRNA downstream 368657 29632278 ~ 29650858 (-) True AMCG00016751
AMCG00016765 mRNA upstream 31279 30067321 ~ 30071224 (-) True AMCG00016765
AMCG00016774 mRNA upstream 52805 30088847 ~ 30099607 (-) True AMCG00016774
AMCG00016773 mRNA upstream 87809 30123851 ~ 30139691 (-) True AMCG00016773
AMCG00016775 mRNA upstream 125751 30161793 ~ 30174288 (-) True AMCG00016775
AMCG00016779 mRNA upstream 180202 30216244 ~ 30223409 (-) True AMCG00016779
TU19143 other downstream 1234008 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 2590864 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 2615593 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 2649376 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 2740181 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 165417 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 490250 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 2387016 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 2461465 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 2461465 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile