RNA id: AMCG00016774


Basic Information

Item Value
RNA id AMCG00016774
length 1743
RNA type mRNA
GC content 0.52
exon number 16
gene id AMCG00016774
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30088847 ~ 30099607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCCTTGTGCTCCTCTGATGTTCGACACACAGGGTTAAAAGGGGGACAACAGCTGATAGCAGTAGGAGAACTACCTAAAAATAGCCAGGCGACTGCAAGCAGATACATAGTGTGGAGTTGAACAGACCACAGATCTGCAGAGTCCATTACTCAGTAAGACACTATAAAGGGGAAGACGCTTTCAGCTTTGAGAGGTTTCCACAGCATTGAGatctattttttgttgtttttgtttttttgtggttggaTTTAGTCTCCATCTATCAGAAATGCCCAAGATCCCTCGACCAGAGAATAGTCAACCAGCAAAAGCACTGTGGTTTGATCGATCGAAATATGCCTATATAAACTTCATTGTGGAAGACAGCAAGGACGTCCAAGTTGATATTCAGGAGAACAAAATGATTTTCAGCTGTAAATCAGCGGATGACACCAACGTCTACAATGAGATTTACTTCTACGACAAAGTGGAGCCCAAAGACTCCAGAGAAAGGCGCTATGATCGCACCATCAACGTGATGCTGAGGAAATTAAAGGATAAAGTTGCGTGGCCACGCTTAACGAAAGACACGGgcaagCCGTGTTGGTTGGCCGTGGACTTTGATAACTGGAGAgactgggagaaggaggaggaggatggcaTGGCCGAATACGAGAGATATGTTGATATGCTACAAGATATGAAAAAGGGAGGAGCACAACCAGCAATGGATGACCTGGATGATTTGGATTTCGATACTGTTGTGGTGTCATGCTGTCCTGCAGAACTTAAACTGGAGAACAATGGGAAGAAGGAGAAGATTAAGGGGTTCAATGTCACCCTGCAAGACACCATTCTGTTCCCCGAGGGAGGCGGGCAGGTGCCAGTCTTGCGCGTTACCCGGGAGGGGGCCGAGGCTGTGCATTTCGTGGAATCTGCGCTGGAGGTGGGCTCTGCTGTGCCGCTGCGGGTGGACTGGGAGAGGAGGTTTGACCACATGCAGCAGCACTCGGAGATGGAGGAGCTGGAGGCAGTGGTGAACGAGAAGATCAGAGCCCACATCCCGGTCACTGTGCAGCTGCTGTCAGCGGACGACCCCACTGTGGAGAAGGTCAGGAGTCGTGGCCTGCCAGACGACCACGCGGGGCCCATTCGAATTGTCGACATTAAAGGGATCGACGCCAACATGTGCTGTGGGACTCACGTGTCCAACCTCAGCCACCTGCAGATGATTAAGATCCTTGGgacagaaaagggaaagaaaaataaaaccaacctGATTTTCCTGGCAGGGCGCAGGGTTCTGAAGTTTGTGGAGAGAAGCTTCAGCACTGAACGAGCCCTGACGTCCCTGCTAAAaacGGGACCAGAGGAGCACGTAGAAGCCGTGGACAAGCTGCAGAAGTCAGTCAAGTTGCTGCAGAAAAACTTCAAGAATAACCCAAACCGCGGCAAAGTCTTCTCCTTACACAGGAAGGATGGAGACAATGAGTTCATGAACATTATTGCTAATGAAATTGGCACTGAGGACACTGTGGCGTTCCTGACAGTGGGGGAGGAGAAGGGGGCAGGTCTGTTCTTGCTGGCTGGCCCAGTGGAGACAGTGGATACTCTGGGGCCCAGGGTGGTGGATCTGCTGGAAGGGAAGGGGGCGGGCAAGAAGGGGCGCTACCAGGGCAAGGCTGGCCGCCTGGCACGAAGGGGGGAGGTGGAGGCTCTGTTGCAGCAGCACACCCGGCTCCACAGCTCAGAGGAGGAGTGA

Function

GO:

id name namespace
GO:0043039 tRNA aminoacylation biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K07050 AARSD1, ALAX; misacylated tRNA(Ala) deacylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19480 lncRNA downstream 44282 30042575 ~ 30044565 (-) True G15675
TU19476 lncRNA downstream 46972 30038790 ~ 30041875 (-) True G15673
TU19477 lncRNA downstream 46972 30039795 ~ 30041875 (-) False G15673
TU19365 lncRNA downstream 281714 29802895 ~ 29807133 (-) True G15585
TU19300 lncRNA downstream 824180 29261312 ~ 29264667 (-) True G15525
TU19499 lncRNA upstream 9846 30109453 ~ 30113284 (-) True G15690
TU19524 lncRNA upstream 105215 30204822 ~ 30205115 (-) True G15708
TU19527 lncRNA upstream 108080 30207687 ~ 30208537 (-) True G15711
TU19535 lncRNA upstream 133941 30233548 ~ 30236867 (-) True G15716
TU19567 lncRNA upstream 330322 30429929 ~ 30431998 (-) True G15746
AMCG00016765 mRNA downstream 17623 30067321 ~ 30071224 (-) True AMCG00016765
AMCG00016768 mRNA downstream 52805 30019515 ~ 30036042 (-) True AMCG00016768
AMCG00016767 mRNA downstream 74912 30008137 ~ 30013935 (-) True AMCG00016767
AMCG00016766 mRNA downstream 91990 29993530 ~ 29996857 (-) True AMCG00016766
AMCG00016762 mRNA downstream 184191 29893213 ~ 29904656 (-) True AMCG00016762
AMCG00016773 mRNA upstream 24244 30123851 ~ 30139691 (-) True AMCG00016773
AMCG00016775 mRNA upstream 62186 30161793 ~ 30174288 (-) True AMCG00016775
AMCG00016779 mRNA upstream 116637 30216244 ~ 30223409 (-) True AMCG00016779
AMCG00016780 mRNA upstream 137367 30236974 ~ 30241569 (-) True AMCG00016780
AMCG00016794 mRNA upstream 365550 30465157 ~ 30467804 (-) True AMCG00016794
TU19143 other downstream 1303340 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 2660196 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 2684925 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 2718708 27369590 ~ 27370139 (-) True G15026
TU18636 other downstream 2809513 27268820 ~ 27279334 (-) True AMCG00016671
TU19522 other upstream 101852 30201459 ~ 30202351 (-) True G15706
TU19613 other upstream 426685 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 2323451 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 2397900 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 2397900 32497507 ~ 32498895 (-) False AMCG00016859

Expression Profile