RNA id: AMCG00016779


Basic Information

Item Value
RNA id AMCG00016779
length 2949
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00016779
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30216244 ~ 30223409 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttgtgTTCATCGGTGATTTACTTACACCTGTGTTTAAGAGAAACGTTGATGGCTATGAGCACCAAGAAAGCTATGATTTAAAAAAGCGTTGCTCTTCATAGCattataaacacaattattacataATAAGACGCTGCCGGCTGTATCGCACTATTCCGCTGCATTTgtggtgttttaattaaaccaggTTCATGTCCCTCACCAAAATTGAGCGAACAGCCGGCCTCTTCGCCAAGCCACTGTGCTTTTCAAACAGGCACATTGACGGACGCCTAACTCGTGGGGTGATACAGCTGTAACATCCTGTCGATTGAATAGAAACAGAAACTTATCGATAGGAGGAAGTAATTGCAGCTCTATCGCTTGGTATTTCTGACGACACCATTACAGTGGTTTTCAGCTGTTTACTTGCAATCTGAGAAAATGGAGACACTGTACCACCAGACGAATAAACAGATCCAAGAGGTGCAGTCCAAAATGCGGAACCTGGAGACCTCCGAGCGCCAGTATGTTCACTTGGTGGAGAATGATCTGCAGGCACAGATTGACCAGATCTTCAGTCAGCTGGAGCGCCTGGAGATCCTGGCCGGCAAGGAGCCACCGAACAGACGGCAGAACGCCAAGCTGAGGGTAGACCAGCTGAAGTACGATGTCCAGCATCTGCAAACAGCCCTGCGAAACTCCCAGCACCGCCGCTACAACCGAGAGGCCgaggagagagagcgggaggaGCTCATGTCACGCACCTTCACCACCAATGATGCGGACACCTCCATCCCCATTGACGAGACGCTGCAGTTCAATTCGTCCCTGCACAGCGCACACCGGGGCATGGACGATCTCCTGGGCAGTGGCAGCAACATCCTGCATGGCTTGCGGGACCAGAGGAGCACACTCAAGGGCACCCACAAGAAGATGCTGGATGTGGCAAACATGCTGGGGTTGTCCAACACTGTGATGAGGCTCATCGAGAAAAGGGCTTTCCAGGATAAGTTCATCATGATGGGCGGTATGCTGGTCACGTGTGTGGTCATGGTCCTGGTGGTGAAATACCTCAGCTGAGACCTGCTCCCGTGGGCCTCCGGTTTCCAGCGCTCAATTTCTCAGTGATTTCACACAATGCCACATCACATCAACCACACAAAATCAACACAAGTTTACCCCTCCAGGGACCTGAGATCTGTGCCCCCTCCACCCCTCTTCCTTTCGTTCCAGTTCTTCTGAGCCGTTTTCCTTCAGTACCCGCCTCCCGGAGCAGCTGGTAAACGAACCCCTCCAGTTAAGTTTGCTGGTGTTGTAGTCAAGCAGGGGAGACCCGTGACAAACTCCAGTAACACACTTCACCCAGGCTTACCTCTCCTAGGACAGGATGGAggggtttgtatttttatgggGGTCAGAAGAAGGGGAACATGGGAGCACACATGGCCCCAAAATATTGCCCCGTCTTAAGCAGGTACCCTGGTTTGACTCCCCTCAGTGCTTCACTCTCGTTAAGATTTAAAGACCAATCGTGGCAGCTGACAGTTCACTGACTTCTGGACAATAGAGCAGAGAAAACTGTGGACAATCTTCATTGTGGAAGAGTGACTGAAGGTGAACTGTGGACATTTGAAGTATCTGACCGAGCAGTGGATCCTGTCAGCccactttcctttcctttcctcctCTGTTCTCTGCCTGCTGTAATTAATTGTAGAGCTGTAATTTCTCACTTTGTAGCATTTAGGTGGTTCCTGGTATTAGTTTCTATCTCATTAGATGTGGTTGTCTGTTTTTGGAGGGATTTACAGTTGTCTGCAGAGCTCCTGTGCCTTTGTGAGCTTGTGATTTAAGATGGCCTCTCAAAGCTGGTGGGGCTGGGCTGTACAGGGTAAGTAAAGGTGTTGAAAGCCCATTGGTGAAACAAGTTGATCCACACCCAGAGTATTGCTTAGATTGATTGggattattaatattgtaatagCACATTAATGACATGACGTTACCCTAAATATTTTAGCAAGACGTATTTTAGAGAAGAGCAGGATGACTAGCAATATAAAATCAGTCCTGCCTGCTCTCACTAACAAGATTTCCTGAGCAGTGTCTACATGGAACCGCAGTGAAATCCTGAACACACGGTAAGatatagattaataaaatacagtatacatagtaagttaataagtaaataatgtgCATTATTGATTTAACTTGTTATCTTCGACACGGAAAACTGCATTTAGTGGATGCTGAACTATTGTCATGTTAGGTGTGCTAAGTGAAAGAGTCGAGGTCTATATATCAGTACTCTGCCACTGTGAGGAGTTCTGggtttgattgtttttggtATTTCCCATAATTCTGTAAcatgcagaaagaaaaacagaattcgTCCTGCCCTTCCATCTGTTCGTCTGCATGCGTGCCCCCCGTGGCTCCAGGGGAAATGGAAAGCCACTGGCTGTAGAAAATAGTGTAGAAGAAATCAGGGGTGGACGGGGGGGAAGGGTGGACTGAGCCTGCCTTCCAGTTACTGTGCTGCTTGCATTAGTTCCTTCACTCCTTCCAGAATATTTGGTGGGTTCCCCAACCCCCCGCCTAGAATAAAGACATTGATACTGTATGTGGAAATGTTAAACAATTTGAGCCTTCCCTTCCACAGTCCCCCAGGCACATAGCAGGGAACTGGACCATCGACCAAACTCTTGTGTTAGAAAGGGTGGGGCTCCAGTGAGAGGTCtaacaataaaatgcattcagagATGGCTTGTGCTGGTTACCTTCTTTATGAAACAGCGGTATACACAGATTCTTCACACTGTACCCAGTCTCTCAGGCCTCTTTAAGTGCAGGAAATGAAGTGGATTTGTGTGCATGAATGTCAGTTAaaggcctttttgttttttcctcctaaAAGCaagcaaggaaaaaaacaaatgtctgaatGTTACTGTTGTCCAGGA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005795 Golgi stack cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K08496 GOSR2, BOS1; golgi SNAP receptor complex member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19527 lncRNA downstream 7707 30207687 ~ 30208537 (-) True G15711
TU19524 lncRNA downstream 11129 30204822 ~ 30205115 (-) True G15708
TU19499 lncRNA downstream 102960 30109453 ~ 30113284 (-) True G15690
TU19480 lncRNA downstream 171679 30042575 ~ 30044565 (-) True G15675
TU19476 lncRNA downstream 174369 30038790 ~ 30041875 (-) True G15673
TU19535 lncRNA upstream 10139 30233548 ~ 30236867 (-) True G15716
TU19567 lncRNA upstream 206520 30429929 ~ 30431998 (-) True G15746
TU19678 lncRNA upstream 775225 30998634 ~ 31002128 (-) True G15845
TU19687 lncRNA upstream 809661 31033070 ~ 31033320 (-) True G15854
TU19697 lncRNA upstream 879970 31103379 ~ 31106792 (-) True G15864
AMCG00016775 mRNA downstream 41956 30161793 ~ 30174288 (-) True AMCG00016775
AMCG00016773 mRNA downstream 76553 30123851 ~ 30139691 (-) True AMCG00016773
AMCG00016774 mRNA downstream 116637 30088847 ~ 30099607 (-) True AMCG00016774
AMCG00016765 mRNA downstream 145020 30067321 ~ 30071224 (-) True AMCG00016765
AMCG00016768 mRNA downstream 180202 30019515 ~ 30036042 (-) True AMCG00016768
AMCG00016780 mRNA upstream 13565 30236974 ~ 30241569 (-) True AMCG00016780
AMCG00016794 mRNA upstream 241748 30465157 ~ 30467804 (-) True AMCG00016794
AMCG00016792 mRNA upstream 327719 30551128 ~ 30557792 (-) True AMCG00016792
AMCG00016793 mRNA upstream 334847 30558256 ~ 30563594 (-) True AMCG00016793
AMCG00016801 mRNA upstream 779697 31003106 ~ 31008426 (-) True AMCG00016801
TU19522 other downstream 13893 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 1430737 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 2787593 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 2812322 27401676 ~ 27403922 (-) True G15067
TU18673 other downstream 2846105 27369590 ~ 27370139 (-) True G15026
TU19613 other upstream 302883 30526292 ~ 30529500 (-) True G15787
TU20184 other upstream 2199649 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 2274098 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 2274098 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 2952667 33176076 ~ 33178883 (-) True G16356

Expression Profile