RNA id: AMCG00016790


Basic Information

Item Value
RNA id AMCG00016790
length 2813
RNA type mRNA
GC content 0.51
exon number 20
gene id AMCG00016790
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30489771 ~ 30512299 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCACACAGAGCAGCCACTTGCTTGGGGCAACCAGCAAATTTCTTCCATTAACCACAACCAGGACCAAGATACACCATACAGAGACACATCCTACTTAAAAAGGATCCCACGTTTCCAGTCTGGAGCACATGATCTAGAGAAGAGGACAACCATGGAAAAGGAAGCCAAAGGTCAAAATCCTGGAGTGGCCAGGAAATTCTCCCCTAGCTCCAGAAGCAACTACCAGGCCTACATTGAGATGAACGAGCTCATAATGGACAAGGATGAGGAGCAGTTCTGGATGGAGACGGGGCGATGGATCCGTTATGAGGAAGGCTACGACCCTGTCGAAGGCAACTGGGGAAAGGCCCACGTCTCCTACCTCACCTTCAAGAGTCTCCTGGAACTCCGAAGGAGCATGGAAACTGGTGCCATTCTACTGGATATTGAGGAGAAGACTCTGGCGGGCATTGCCAAGCGGGTGGTGGACGAGCTGGTGATCGTAGATGAAATCAGGGAGCAGGATCGGAATGATCTGATGCGGGCCCTGTTGCTGAGACGCAGCCAGTCAACAGAAATTGAGCCACTCAACAAGGAAGAGGACATTGAGATGGAGACTTTCTCCGTCACCCGGGAGAGAGATACTGCAGAAAACGTGGAGGCTACAGTGGTTCTAGTAGGTGCTGCAAACTTCCTGGAGAACCCAACCGTGGCCTTCGTGCGGCTGAAGGAAGCAGTGGAGCTGGATGCCGTGCTGGAGGTCAACAAGCCTGTGCGTTTCCTGTTCATGGTTCTGGGCCCCAGTCTGCCCAACATGGAGTACCACGAGATGGGGCGCGCTATCTCCGCTCTCATGGCTGACCGGGTGTTTAACAGCGAGGCCTATGCGGCAGAGAAACGCCAGGATCTGACACAGGCCATGGCAGAGTTCCTGGACTGCAGCATCGTCATCCCGCCCTGCAAGATTCAGAACATGGAGATGCTGCACTCCATCATTACCTTCCAGAAGGAACTGCTGAAGAATCGCTTACGCCCTGAGAGCAAGCTGGACAGAGAGGGCCTGTTGAGGTCAAGGAGAGCCAAATCGGTAACAGGTCCAGTGGACAACCCCCTTGTGAGAACTGGTTGGCCATTTGGTGGGCTGGTCAAGGACATAAGGCGACGCTACCCTCACTACCTCAGTGACATCACGGACGCCCTCAATCCTCAAGTCGTGGCCGCTGtcatcttcatttattttgctgctttGTCACCAGCCATCACTTTTGGGGGACTTCTGAGTGAGAAGACAGGGAAGATGATGGGAGTGTCAGAATTGATGGTGTCCACAGCTGTCCATGGAATCATCTTCTGCTTGCTTGGAGCTCAGCCTATTCTTGTCATTGGCTTCTCAGGGCCATTACTAGTCTTTGAAGAGGCCTTGTACAGTTTCTGTACAGCATATGGTATGGAGTACATCGTGGCCAGAGTGTGGGTGGGAGTCTGGTTGGTAATTATCGTTTCCCTCACCGTGGCCTTTGAGGGCAGCTTCCTGGTGCGCTACATCTCCCGCTTCACCCAGGAAATGTTCTCCATCCTCATTTCTCTTATCTTCATCTATGAGACCTTCGCCAAAATCTTGAATTATGAGGACCCAGATTACCTCCATAACTTAAGTTTGCGGAATCACACCGGCAATGAAACAGATTTAGACCCTGAAGAATTGGGCATCCAATATGCCAACACTGCCCTTCTCTCGCTGATTCTCATGGGCGGCACTTTCTTTTCAGCCTTGTTCCTCCGAAAGTTTAAGAACAGCCGCTTCCTGCCTGGACAAATCCGACGGATTATCGGTGATTTTGGTGTCCCCATCTCAATTTTCATCATGGTGGCCATCGACTATTCCATCGCCGACACTTATACTCAGaaacTGAGCGTGCCTTCAGGTCTGTCTGTGACTAATCCCAAGAAACGGGGCTGGTTCATCAACCCCCTGGGCTTGAAACAGGACTTCCCCATATGGATGATGTTTGCTGCAGCTGTGCCCGCTCTTCTTGTCTTCATCCTCATCTTCCTGGAGTCTCAGATCACAACGCTGATCATCAGCAAGCCGGAACGGAAGATGGTAAAGGGCTCAGGATTCCATTTGGATTTACTACTGATTGTTGGCATGGGGGGCATCGCTTCCATCTTTGGGGTGCCCTGGCTGAGTGCTGCCACTGTGCGGTCCGTCACCCATGCTAATGCCCTAACTGTAATGCACAAGGGGGGCAAGCAGGAGATCGATAAAGTGCTGGAGCAGAGGATCAGTGGCATGTTGGTGGCATTGCTCGTAGGCCTGTCGATCCTGATGGAGCCCATCCTGAAGCTGATTCCCTTGGCTGTGCTGTTTGGGATCTTCCTTTACATGGGGGTGGCATCCCTTTTTGGCATCCAGATGTATGACCGCATTCTTCTCCTGTTTGTGCCTCCCAAGTACCATCCTGACACGGCCTACATCAAACATgtcAGTATACTGCGTGTGCACTCATTCACCTTGATCCAAATTGTGTGTCTGGTGCTTATGTGGGCAGTAAAGTCCAGCCCGGCGTCTCTAGCCTTGCCTTTCGTCCTCATCCTCACCATCCCACTGCGCATCTACATGACTGGACGCCTCTTCACTGAACGAGAGATGAAATGTctgGATGCACCTGACGCCAAGGTGATCTTGGAGGAAGTATTAGATGAGGATGTGTACAATGAAACTCAGATGCCTGTTTAAATGGGCAGGGTCATCACACCTCTTTAAGAGAGATGTACTCAGGCaaaaagcaaatcaataaaTCAGGAACAAAACCTTTGGGTGCCTCAatc

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0008509 anion transmembrane transporter activity molecular_function

KEGG:

id description
K06573 SLC4A1, AE1, CD233; solute carrier family 4 (anion exchanger), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19550 lncRNA upstream 57977 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 274061 30213172 ~ 30215710 (+) True G15651
TU19400 lncRNA upstream 382055 30022607 ~ 30107716 (+) False AMCG00016769
TU19390 lncRNA upstream 470084 29930664 ~ 30019687 (+) False G15605
TU19650 lncRNA downstream 393311 30905610 ~ 30906839 (+) True G15817
TU19680 lncRNA downstream 493598 31005897 ~ 31007006 (+) True G15847
TU19686 lncRNA downstream 520770 31033069 ~ 31033321 (+) True G15853
TU19814 lncRNA downstream 963008 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 967365 31479664 ~ 31481356 (+) True AMCG00016820
AMCG00016787 mRNA upstream 6244 30481742 ~ 30483527 (+) True AMCG00016787
AMCG00016786 mRNA upstream 11754 30472982 ~ 30478017 (+) True AMCG00016786
AMCG00016788 mRNA upstream 28403 30455974 ~ 30461368 (+) True AMCG00016788
AMCG00016783 mRNA upstream 36669 30448280 ~ 30453102 (+) True AMCG00016783
AMCG00016784 mRNA upstream 50328 30434853 ~ 30439443 (+) True AMCG00016784
AMCG00016791 mRNA downstream 3062 30515361 ~ 30527807 (+) True AMCG00016791
AMCG00016789 mRNA downstream 18733 30531032 ~ 30550430 (+) True AMCG00016789
AMCG00016795 mRNA downstream 52267 30564566 ~ 30569822 (+) True AMCG00016795
AMCG00016796 mRNA downstream 64122 30576421 ~ 30577597 (+) True AMCG00016796
AMCG00016798 mRNA downstream 325426 30837725 ~ 30838354 (+) True AMCG00016798
TU19453 other upstream 252930 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 376487 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 406243 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 414875 30072938 ~ 30074896 (+) False AMCG00016772
TU18924 other upstream 2384060 28104737 ~ 28105711 (+) True G15223
TU19688 other downstream 547041 31059340 ~ 31061145 (+) True G15855
TU19913 other downstream 1209640 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 1216257 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1986757 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1987277 32499576 ~ 32503256 (+) False AMCG00016854

Expression Profile