RNA id: AMCG00016791


Basic Information

Item Value
RNA id AMCG00016791
length 3673
RNA type mRNA
GC content 0.48
exon number 21
gene id AMCG00016791
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30515361 ~ 30527807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGCCAGCGGTGCAGAGCTGGCTAACATTCAACCCAGCCCCTCCACAGCGAGCTCGCAACAGGAACAGAAAAGCTGGTAAAGACGCTTCTTCCTCCGTCGCCATACCGCTAGAGAACCCCCATCTTCCCGCACTGCTCGTCAGTCCCACGCCGTCTCCCCTGGACGTTTTTGAAGGTAACAAAAGATACAGAAAATGAACGGGGAAATGGAGACTCCTGTTAAGGAACCGGAACTTTGGGCAAAAGAGGATCTGTTACGACTGCTGGATGGCATGAAAGTGAACCTCCCTCAGAATGACCTCAGCAAGTTCAAGACTGCAGAGTCCCACTTGGACTGGGAGAAGGTGGCTTTCAACCACTACTCCGGGGAGATGTGCAAGCTGAAATGGCTGGAAATCTCTCATGCGgTCCGCAAGTTTCGCACCCTTTCTGAGCTGATAATAGACGCTCAGGACTACGTCAAGAATCCATACAAGGGGAAGAAGCTCAAGAAACATCCTGATTTCCCAAAGAAGCCACTGACTCCCTACTTCCGCTTCTTCATGGAGAAGAGGGCTAAGTATGCAAAGCTGCACCCGGAGATGAGCAACCTTGACCTGACGAAGATCCTCTCCAAGAAGTACAAAGAACTCCCAGATCGAAAGAAGgcaaAATACATGCAAGATTTtcaaagagagaaagaagaatTTGAAGGCAGTATGGCAAAATTCAGAGAGGAGCACCCTGAACTGATGGAGAACCTGAAGCGCTCTGATGTTCCAGAGAAACCCAAGACCCCCCAGCAGCTGTGGTACAATCACGAGAAGAAGATCTTCTTAAAAACACACCCTGATGAGACAATGCGTGACTTCATCCAGCAACACCCGGAGCTCAACATGTCTCAGGACGGTATCAACAAGTCCACCCTCACAAAGGCAGAACGGCAGCTGAAGGATAAGTTTGACGGTAGACCGACCAAACCTCCGCCGAATGGCTACTCCATGTATTGTGCGGAGCTCATGTCCAACATGAAGGACGTCCCCAGCACAGAGCGTATGGTGATGTGCAGTCAGCAGTGGAAACTCCTCACTCAGAGGGAGAAAGATACCTACCAGAAACGCTGTGAACAGaaaaagaaagaatatgaAATTGAGATGAACCGCTTCCTGTGTAGCATCTCTGAGGAGGAGCAGCGGAGGGTTCTGGGAGAGGAGAAGATGCTGGGTTTCAACAGGAAAGGATCCAGCAGCCCCTCAAGCAAGAAGAATTCAAAATCCAAGAGCACAGACAAACCCAAACGGCCCATCTCGGCCATGTTCATATTCTCAGAAGAGAAACGACACAAGGTGCAGCAGGAGCGCCCGGACCTGTCGGAAAGCGAGCTCACACGGACACTGGCGCGCATGTGGAACGAGTTATCAGACAAGAAGAAGGAAAAGTACAAGCGGCTGGAGGCGTCGTTAAAGGCGGAGTCTGAGAAGAAAGGTGCAGAAGATCGCACAAGACTTCCAGAGTCGCCCAAAACGGCCCAGGAGATCTGGCAGCAGAGTGTCATTGGGGATTACCTGGCCAGGTATCGGAGTGACCGGTCCAAAGCCCTTAAAGCCATGGAGGCCACTTGGAACACAatggagaagaaggagaagatcATGTGGATCAAGAAAGCTGCAGAGGATCAGAAGAGATATGAGaGAGAGCTGAGTGACATGCGTGCTCCTGCAGCAGTGGTGATGACCGGAAAGAAGAGGAAGTTTGATGGAGAGCCAAAGAAACCACCATCGAACGGCTACCAGAAGTTCTcccaggagctgctgtccaGCGGGGAGCTGAACCACCTGCCAATGAAAGAGAGGATGGTGGAGATTGGTGGGCGCTGGCAGAAACTGCCCTTGAGCCAGAAGGACCGCTATAAGAAGATGGCCGAAGAGAAGCAGAAGCTGTACAAAGTGCAGCTGGAGCAATGGCTGACGAGTCTGTCGCCCCAAGAAAGAGCTTCCTACACAGAGTACCTCTCCAATAAACGCAAAAGTACTGCAAAACCGGGTGGGACGAATGCCAAAGTGAAGGCTGCCCCTAAATCTgacacggaggaggaggaggaggatgatgaagaggaggaaaaaGTTGGGTCTTCAGAAGAGTCCTCCAGCGAAGAAGacagtgaggaagaggaggaggaagaggtgaGGaatgaggaagaggaggaggatgacgaGGAAGAGGCAGACGACAAGGAGAACAAGTcggagagcagcagcagcagctcgtCCAGCTCAGAGGAGTCTTCCGAGTCGGACTCGGACTGATCCCGGGGATCCCTTTGATGTTTCCCATCAAACCAACAAAAAGCAAACCGATCCCTCCCGGCTGTGAGCAGCACAGAGCCAAGAGAGCGGGGATCAGAGCCCCCCGTACACGCTGCCATATCAGCaccccactcccccccacccccatgagGGAACATTTTgtgagccaaaaaaaaaagacttgcgAAAAAGCTTTTTGTGCAGAGAAGccacccctctccctcctccaatCCCCTCGCTCCCTCATGCCTCTCTAAACAGACATTCAGATTCTGGCCTCTAGGGACAGCTATGCTTCTGCTGCGACAGGTCTGaggtttttcttatttttacatcCGCTACTTTGACTGTCTGCCCCCAGAGCTCctcttcagcttttttttttatttgttcgtGCACGTTTTTTTGTCAAACCCCAGCTTGGAGGATTTTCTAGATATACTTTTCGAAAACACGCAAACTCCTGTAAAGAATTTCAACTGtatgattttagttttacaagaacttatgatgaaaataaaccatCACAACTGGAgccctctccccccccacacacacctttttTTAAAGCTCTTTGTAATGAACAATTTTCAAAACATGCCACCCAGTGATGCTCTTTGAAAGGGAAATTATCCTTTCTTAGTGCGTGTACATAATAGGGGTATTTCTTGCCTGATTCCCTGATGGCAGGAAGCGATGGACACATTTGTACTGTAGGATTATTAGGAGGGTGTGGGGGACCACGGACTGCAGTCTTAAGTGAATGCAGTAATTTGAACAGGCCTCTGATCAacacacagttttgtttttttatatctgaataTGAGGAAGAAACAAGCCATGGTTAGTGCAATGTGTGATGTAGGccaaatacagacaaaataaatgtttttttgcttctCAAGCTCTCGGTTTTACTTAGCAGACTGAGAGACCTAGCTGCAGTGGACGATTTTCTATTGACATCAAAAAGTCAGTAAATCATGTAAAAAATTGTTAGGGTTTTACATGATTCAATCTTACTTCAAGAGCTCTCTGTAGAGAAGgttgttttccatgttttgaAGTTGGCTAATGCCACATCAATTTCCACAACAAGGGTATCCTGAATATTGCTTTGCCATTAAGAGGTGTTGGAGTCTATGATCTAACTGCATTCGAATTAGGGAAGCAGGCCTCCTGTTCAGAAtgattcttgttttttattgccAGATTCCATAAAATGCTTCAAATGGTTTCAGTAGGGTTGATATTTTCTGATTAAGACTAATTTTCCTGCatccttgttttttgttttttatatcagAACCATGTGTATATGATCTTTaaacacaagtttttttttttacaaattggAAAACTGTCACCAGTAAGCTTTCTACagtg

Function

GO: NA

KEGG:

id description
K09273 UBTF; upstream-binding transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19550 lncRNA upstream 83567 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 299651 30213172 ~ 30215710 (+) True G15651
TU19400 lncRNA upstream 407645 30022607 ~ 30107716 (+) False AMCG00016769
TU19390 lncRNA upstream 495674 29930664 ~ 30019687 (+) False G15605
TU19650 lncRNA downstream 377803 30905610 ~ 30906839 (+) True G15817
TU19680 lncRNA downstream 478090 31005897 ~ 31007006 (+) True G15847
TU19686 lncRNA downstream 505262 31033069 ~ 31033321 (+) True G15853
TU19814 lncRNA downstream 947500 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 951857 31479664 ~ 31481356 (+) True AMCG00016820
AMCG00016790 mRNA upstream 3062 30489771 ~ 30512299 (+) True AMCG00016790
AMCG00016787 mRNA upstream 31834 30481742 ~ 30483527 (+) True AMCG00016787
AMCG00016786 mRNA upstream 37344 30472982 ~ 30478017 (+) True AMCG00016786
AMCG00016788 mRNA upstream 53993 30455974 ~ 30461368 (+) True AMCG00016788
AMCG00016783 mRNA upstream 62259 30448280 ~ 30453102 (+) True AMCG00016783
AMCG00016789 mRNA downstream 3225 30531032 ~ 30550430 (+) True AMCG00016789
AMCG00016795 mRNA downstream 36759 30564566 ~ 30569822 (+) True AMCG00016795
AMCG00016796 mRNA downstream 48614 30576421 ~ 30577597 (+) True AMCG00016796
AMCG00016798 mRNA downstream 309918 30837725 ~ 30838354 (+) True AMCG00016798
AMCG00016797 mRNA downstream 396206 30924013 ~ 30949874 (+) True AMCG00016797
TU19453 other upstream 278520 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 402077 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 431833 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 440465 30072938 ~ 30074896 (+) False AMCG00016772
TU18924 other upstream 2409650 28104737 ~ 28105711 (+) True G15223
TU19688 other downstream 531533 31059340 ~ 31061145 (+) True G15855
TU19913 other downstream 1194132 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 1200749 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1971249 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1971769 32499576 ~ 32503256 (+) False AMCG00016854

Expression Profile