RNA id: AMCG00016793


Basic Information

Item Value
RNA id AMCG00016793
length 2120
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00016793
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30558256 ~ 30563594 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGTCTGACTGATGAAATTTGCCTGCAGTACAGAAGCCGGGCTCAAATGCAGTTCCTGATATACAAACACCCAGGTTAACTTATGGATGCCCAGGCGGTTGTGAGTTGTAATAATTCCTAAAAGTCATCAACCTGCCATTTTACTGGATTCTACAGAAGTGGCGTGAGTACAGGGTGACTGTAACAGAAGCACACTACAGCAATGTCCAGGGACACGTTTGTCTTCACCTCTGCCACCCTGCGCTCACTGAGGTTGCAGCAGGAGTTCCTggactgggagagagagcgCCGCGCCCTGGCCAGGCGGAGTGCTGCTGTAAGAAGACCCCTGCCCCCAGTCAGGCAGAATCTTGTCCCCAGACAGACCCCTGAGTCCAAGTACTGCCGTGACACTGCCATTCATGGCACACTCCTCTCTGGGGACCCTGTGAAAGTCAAGTCCATCTTCAGAGATGAGGCTATGGCCAATGCCATCATGGAAACAGTCCAGGATGAGATGGTCTGGTCCGCCGAGCTGGGGCATTGGGTACTTACTTCCAAAACTAAGCAGAGTTCAGCACTGCGTATTACTGCAAGCCGGGGATTCACTGCTTGTGCCAAGGCCCTATTGACTGCAGGTGCTGATGTTAATGCCTCAGTTGGGGGCACCACTGCCCTGCATGATGCCTGCACTGGtggacacactgactgtgtcaACCTCTTGCTCAGCTATGGTGCCAACCCTAACATCCTCTCCTCAGAAGGCTGTGCTCCATtgcatctctgcagcactcccaAAACCTACCAGTGTGCCAAGCTCCTTGTGGAGTATGGGGCGACAGTGAACATCCACACCAAGGACAGCCAGCTCACTCCTCTGCATGTGGCGGCCAAACAGGGCCTGGAGGAGCATCTGGCCCTCTACCTGTGCCACGGGGCGGATATTTTCTCCAGGAACCGTGAGGGGGAGACAGCACTCAATACAGCTTGTGCTGGGGCTGAGAGGCCTTCTGAGGGGGGGCGCTACTACCGTGTGGTCCAGCGGCTACTGAGCAGTGGGGCCGACCCCAGGGTGGCAGGTAGGAAGCAGCACACCCCACTTCACAATGCCTGTGCTAACTGCAGCTACAGGATCATAAAGCTGCTGCTGGAGCATGGAGCAGAAGTCAACCTCACCAACTGTGCTGGGTACTCTCCTATGGACTGCTTACTCCAGGTGGTGGAGGACTACTTGGAGTATGAGCCAGAGAGAATGGTCCAATCACTGCTCAATCACGGGGCTCTGCCTGTCCACCCAAAGATGCTAAAACTGTGCTCATCGTCCCCTCTGACCATGGAAGTGCTTCTGAACTCCTATGACAACATCCCACTTTGTAATTCCTGGGTTGAAACTGTACCACCGGAAGTTTGGCAGAATCACCAAACGTTCTATGAGTCTGTGCTGCAGATGAGCAAGCAGCCCCGTCGGCTGCAGCACCTGTCCCGCTGTGCCCTGCGCCGCCACCTCGGAGCACACTGCCACTCCGCCATCACCCTGCTGGACCTGCCCCAGTCACTCAAGGTCTACCTCTTGCTCGAGACAGAAGGATGTCTGAAATGACCACAAGAACAGTGTTCTTCCGAGTCCACCTCCTCTCAGTTTTAAGTACTTCTGGATTTccctaaaaaaaaatcacagaccAGAACAGAACCAACATTCAGGAATAGTTTAGAGCGAGTAAAGCTGATAAGAAGAATGGAATCAAGGTGACAGCAGGCACACTTTTACGGGGAGGCCATGACTACCCAGCGTGGGATGTTTTAACCTTCACAATGTTTATGCTAAGGACACAATCTCTGACCACACAGTGCCCTGTTATTtactcttatttattatttaactgtGAAATAAATGCCTTTAGTAATATTCTGTCATAATACTGACATCCCggaatgtaattataatatactTCAACATTTTCTCTGTTGTTTTGCACATAAACATGCTTATTTAGGCTATTCTAATTAAGGAATACTTTTGACAATTCTGACAGGGAAATATCAGTtggaatatttgtattataattattattatcattggtgtattttgtcttgtgaatgtgaaaattaataattaaaatgtaaaccttgTTGAACAAA

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K10338 ASB16; ankyrin repeat and SOCS box protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19567 lncRNA downstream 126258 30429929 ~ 30431998 (-) True G15746
TU19535 lncRNA downstream 321389 30233548 ~ 30236867 (-) True G15716
TU19527 lncRNA downstream 349719 30207687 ~ 30208537 (-) True G15711
TU19524 lncRNA downstream 353141 30204822 ~ 30205115 (-) True G15708
TU19499 lncRNA downstream 444972 30109453 ~ 30113284 (-) True G15690
TU19678 lncRNA upstream 435040 30998634 ~ 31002128 (-) True G15845
TU19687 lncRNA upstream 469476 31033070 ~ 31033320 (-) True G15854
TU19697 lncRNA upstream 539785 31103379 ~ 31106792 (-) True G15864
TU19730 lncRNA upstream 608591 31172185 ~ 31176602 (-) True G15890
TU19778 lncRNA upstream 806486 31370080 ~ 31379449 (-) True G15927
AMCG00016792 mRNA downstream 464 30551128 ~ 30557792 (-) True AMCG00016792
AMCG00016794 mRNA downstream 90452 30465157 ~ 30467804 (-) True AMCG00016794
AMCG00016780 mRNA downstream 316687 30236974 ~ 30241569 (-) True AMCG00016780
AMCG00016779 mRNA downstream 334847 30216244 ~ 30223409 (-) True AMCG00016779
AMCG00016775 mRNA downstream 383968 30161793 ~ 30174288 (-) True AMCG00016775
AMCG00016801 mRNA upstream 439512 31003106 ~ 31008426 (-) True AMCG00016801
AMCG00016800 mRNA upstream 448969 31012563 ~ 31015970 (-) True AMCG00016800
AMCG00016802 mRNA upstream 496757 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016807 mRNA upstream 613962 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016812 mRNA upstream 728688 31292282 ~ 31315388 (-) True AMCG00016812
TU19613 other downstream 28756 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 355905 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 1772749 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3129605 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3154334 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1859464 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1933913 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1933913 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 2612482 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2862894 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile