RNA id: AMCG00016795


Basic Information

Item Value
RNA id AMCG00016795
length 2494
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00016795
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30564566 ~ 30569822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACTTCTACGCAAAACGTCATCATCTGTGCACTGCCTATGCTTGCTTGAAATGTTAGCCGCGACAATGCAGAGGTCTTGAAGTCCTGTGATAGGGccgctgtttttgttttgtttgttttgatacttTCTTAAGTTACATGgctttggaaaatatatacCGACTTCGTTTTCGCTGTTTTACGGTGATATCAGAGGTGGAACTGAATAATTGCTATGgCTTGCAGGTTGAAGGAATTATTTAACGTTGGTGAAGAGTTTGAAGATGAGgatgatttatttttgaatttggaTGCAGAAATACATACTGCCACTCCAGCTGCAGACCCTTCTTTCAGGGAGTCTGTCACAGCCCCCATCCTGAGGGAGCCATCAACAGCTAACCTCCAGCCAGCGAAAAACAAACACCCTCAGCAACAGAATGACATTTCCCCTCGGTTGTCACTGAGCAGCTGCCTGCAACACAGCATCAAAGATGGCACTCGTGGAAACTCGCCTGCTCCGGAGCCTTCTGGTTTTCAACTGCGACCCCTTTCTAAATCTACCATCCCTTCTGGAGACATTCCTAAAACTGTAAATGGAGATGTTGCCCACAAGCAGCAACAGAACCTGGCTCCTCCATCTGCCGGGGGAAAAGAGGCCAGCTCCACATATGGCATACAGTCATTAGTGACTGCTGGTGATGAATTTGATGACCTGGACTGGGATGTCTCCTTTACAGATGCCGATGAAGCTCCCTCACAGGCGCATGGGGGTCAGCCTGTGCCCACGAACAGGCTCTCAATAACGCATGGCACTGTTACCCACCAGTCCTCTCCTGTACAGCCCATCTGTGACTCTGTCTCCCCAGCTAAGAAACCACATATCTCCAATCCCACCAGCAGTTCTCAGTTGGGTAGACACCTGCCAGGCCCTAATTCAGAAAATATTGCACCTAAAGGCACATGGAGCCCAGGGGGACAAACTTCTTGTGGTCTAGACAATCCTTCCTTCACTAGGCAAGagtttcctgtttcctgtcttACTCCTTCCCTGAACCCCATCCCGTCCACTGGTAGGAACCAGGCACCCAAACATTTGAGTAACTTGCGGGGAGTGGACTACAGTTTTGTTGCGGCTCAGAGCCAAATTGTAAGTCCGGTGACGCCCAGGGCATCCAGACCACAGACGCCACAGATGAGTCTCAGTTTCCCCAATGCCAGAATGCATGGTTTCTCAGGCCCATTTCCCATGAGGCCCAGCTGTCTGATGTCCAGTGTGGAGGCCTCCAGTCCGGTCTCCAGAGGGTCCATTTCCCCGATTACACCTAGATCCCTGCAAGCTCCCGTCTTCACTAACCACCTTGTGCAGCTAGTATCAGCAGCGAACAAGACTCCTCATACCCCCCGATTGAACCCTCCCCAGCCTAAGACCAGGCGTTTCCCAGGTCCAGCTGGGCTCTTGCCCAAGCAGTTCAGTGGAAGAAACTTGGATGACATCCTGATCTCGCCTCCTCAGACCCCGGCTCATGGAGCCCTGGCCAAACTGCAGACACCGgtCACCAGCTCTCAGCAGTCAGAGGAGGAGTTTTGCCGTGGGCCATGGGCAAGGATGAAGGCTGAGATGGGATTGGATGAAAGGAATCCATCCAGCTTTCTCTGCTCTTACAGTGTCATCATGGTGCTCCGCAAAGCTGCTTTGAAACAGCTTGCCAAGAACAAAGTGCCCAACATGGCAGTGATGGTGAAATCACTCACTCGCACCAACAGTGATGCCAGAGCCGTGTTCAGAGACCCCACAGGGGAGATGCAGGGCACCATTCACCGGCAGCTGCTGGAGGAGCGGCAGGCAGAGCTGAAGACCGGAGCGGTGCTGCTCCTGAAGCAGGTAGGGGTGTTTTCTCCATCCCACCGGAACCATTATCTGAACGTGACTCCCAACAACCTGCTGAGAATCTACACCCCTGATGGCACTGAGTGGACCTCCACCCATAATGCATCAAACAAAACGAGCACAGAACTCGAACCGAGTGCCAGTAGACCACAACACGGTCCCTGCACAATGCGCCTCATCTACGATGACGACGATGATAACGGCAGTGGCAGCAAGCCCAGCGGACAGCCGTGCACACTACAGCGTGATGAGTCCAGCCATCCTGGAGAGAGAGCACACCCAGACTCTGAAACAAAATCATTGGATGACACACAGTGGGAAGCagATGATCTGGATGACCTGATGGGGGAGCTTTCAGAGGACTCTTACTGTTTCTGACACAAGCTGGTGTTACCATCAATCTGTGTAGGACAATGGAGAGAAAGGAGAATGTATCTTTGggttcacaatttttttttttgtatgtatatattaacttaattttgttaaaaatgtatttgaacaatCATCATTCatctgaaagggaaaaaaaataaacctgttaactgtttatgtacatatattatGCAAAAATATGCCATATTGGcctatattttttgttcttcttctttacaatgcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19550 lncRNA upstream 132772 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 348856 30213172 ~ 30215710 (+) True G15651
TU19400 lncRNA upstream 456850 30022607 ~ 30107716 (+) False AMCG00016769
TU19390 lncRNA upstream 544879 29930664 ~ 30019687 (+) False G15605
TU19650 lncRNA downstream 335788 30905610 ~ 30906839 (+) True G15817
TU19680 lncRNA downstream 436075 31005897 ~ 31007006 (+) True G15847
TU19686 lncRNA downstream 463247 31033069 ~ 31033321 (+) True G15853
TU19814 lncRNA downstream 905485 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 909842 31479664 ~ 31481356 (+) True AMCG00016820
AMCG00016789 mRNA upstream 14136 30531032 ~ 30550430 (+) True AMCG00016789
AMCG00016791 mRNA upstream 36759 30515361 ~ 30527807 (+) True AMCG00016791
AMCG00016790 mRNA upstream 52267 30489771 ~ 30512299 (+) True AMCG00016790
AMCG00016787 mRNA upstream 81039 30481742 ~ 30483527 (+) True AMCG00016787
AMCG00016786 mRNA upstream 86549 30472982 ~ 30478017 (+) True AMCG00016786
AMCG00016796 mRNA downstream 6599 30576421 ~ 30577597 (+) True AMCG00016796
AMCG00016798 mRNA downstream 267903 30837725 ~ 30838354 (+) True AMCG00016798
AMCG00016797 mRNA downstream 354191 30924013 ~ 30949874 (+) True AMCG00016797
AMCG00016799 mRNA downstream 414651 30984473 ~ 31001821 (+) True AMCG00016799
AMCG00016805 mRNA downstream 503172 31072994 ~ 31103613 (+) True AMCG00016805
TU19453 other upstream 327725 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 451282 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 481038 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 489670 30072938 ~ 30074896 (+) False AMCG00016772
TU18924 other upstream 2458855 28104737 ~ 28105711 (+) True G15223
TU19688 other downstream 489518 31059340 ~ 31061145 (+) True G15855
TU19913 other downstream 1152117 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 1158734 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1929234 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1929754 32499576 ~ 32503256 (+) False AMCG00016854

Expression Profile