RNA id: AMCG00016796


Basic Information

Item Value
RNA id AMCG00016796
length 678
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00016796
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30576421 ~ 30577597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATCTGAAGGAGAATCCAAGCGAGGGCAGTGTTGGGAGCTTCCAGCCTACCAGCCTCCAAGTGTTCGCCCACAACTCTACACTGCATGGGATTCGCTACATCTTTGTCTATGGACCCGTGACCCTGCGCCGTTTCCTGTGGACACTGGCGTTTCTGGCTTCTCTGGGTCTCTTGGCGGTGGAGAGTGCAGAGAGGGTGGCCTATTTTTTCTCCTACCCTCACGTTACCAAAGTGGACGAGGTGGTCTCACACAGCCTGATCTTCCCAGTGGTCACTATCTGCAACCTGAACCAGTACCGCTTCAACAAGTTAACACGTAACGATCTCTACCATGCCGGGGAGCTGCTGTCCTTGCTTGACGTCCACTTGAAGATCCCTGAGCCCCACTTGGCCGAGCCAGAGGTTCTGGCGATCCTCGTGGAGAAGGCCAACTTCAGCAACTACAAGCCCAAGCCCTTTAGCATGCGGGAGTTCACAGAGCGCGTTGGCCACGACATGAAGGAGATGATGCTGTACTGCAAATACAGGGGCCAGGAGTGCAGCCCCACAGACTTCAAAATGCCTTCCCCGTGTGCATTTAAACTCTTAAAAAGAAACTTGGATGCACATACTTCCGTGTCTGTCCTCAGAGGGGATGTCCTCAGCCTGCAGGAGTCCAAGCTTTGTGATCCCTAG

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19550 lncRNA upstream 144627 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 360711 30213172 ~ 30215710 (+) True G15651
TU19400 lncRNA upstream 468705 30022607 ~ 30107716 (+) False AMCG00016769
TU19390 lncRNA upstream 556734 29930664 ~ 30019687 (+) False G15605
TU19650 lncRNA downstream 328013 30905610 ~ 30906839 (+) True G15817
TU19680 lncRNA downstream 428300 31005897 ~ 31007006 (+) True G15847
TU19686 lncRNA downstream 455472 31033069 ~ 31033321 (+) True G15853
TU19814 lncRNA downstream 897710 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 902067 31479664 ~ 31481356 (+) True AMCG00016820
AMCG00016795 mRNA upstream 6599 30564566 ~ 30569822 (+) True AMCG00016795
AMCG00016789 mRNA upstream 25991 30531032 ~ 30550430 (+) True AMCG00016789
AMCG00016791 mRNA upstream 48614 30515361 ~ 30527807 (+) True AMCG00016791
AMCG00016790 mRNA upstream 64122 30489771 ~ 30512299 (+) True AMCG00016790
AMCG00016787 mRNA upstream 92894 30481742 ~ 30483527 (+) True AMCG00016787
AMCG00016798 mRNA downstream 260128 30837725 ~ 30838354 (+) True AMCG00016798
AMCG00016797 mRNA downstream 346416 30924013 ~ 30949874 (+) True AMCG00016797
AMCG00016799 mRNA downstream 406876 30984473 ~ 31001821 (+) True AMCG00016799
AMCG00016805 mRNA downstream 495397 31072994 ~ 31103613 (+) True AMCG00016805
AMCG00016803 mRNA downstream 529832 31107429 ~ 31111908 (+) True AMCG00016803
TU19453 other upstream 339580 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 463137 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 492893 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 501525 30072938 ~ 30074896 (+) False AMCG00016772
TU18924 other upstream 2470710 28104737 ~ 28105711 (+) True G15223
TU19688 other downstream 481743 31059340 ~ 31061145 (+) True G15855
TU19913 other downstream 1144342 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 1150959 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1921459 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1921979 32499576 ~ 32503256 (+) False AMCG00016854

Expression Profile