RNA id: AMCG00016798


Basic Information

Item Value
RNA id AMCG00016798
length 630
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00016798
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 30837725 ~ 30838354 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATCAGAGGTCTTGCAGGAAAGGAGACCCTCCAGTGGCCACAAGAAGTCCCCCAAGAAGGAGAGGAGAAAAGCGCCAAGGGGAGTACGACAGCTCACAGTGGCCTTCATCACTCGGACCAGGCTGCATGGGGTCAAGTACATTTACTCCCGTGGGTCCTCTTTCCAGCACCGTGCCCTCTGGTTCTTGGCTTTCTGCACCTCGCTGGGTTTTTTGCTCTCCTGGTCCTCTAATCGATTCCTCTATTGGCTTTCCTTCCCCACGCACACCAAGTTCCACATGGAGTGGGCCAAGGAGCTGCAGTTCCCCGCCGTCACCATTTGCAACAACAACCCCATCCGCTTCTACAAGTTGACCAAGAGTGACTTGTATTTCGCCGGACACTGGCTGGGCCTGCTCCTGGCAAACCGCACGGCCCGCCCCATCGTCCTGGAGCTCCTGAGGGAGGACCGGCAAAAGTGGTTCCAGAAGCTGTCGGATTTTCGACTCTTTCTGCCCCCGCGCAATTTCGAGGGCACTAATTTGGAATTTATGGACCGCCTAGGGCACCAGTTGGATGATATGCTGCTATCCTGTAAATATCGAGGGGAGATGTGTGGACCGCAAAACTTTTCATCTGTAAGTTGA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19550 lncRNA upstream 405931 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 622015 30213172 ~ 30215710 (+) True G15651
TU19400 lncRNA upstream 730009 30022607 ~ 30107716 (+) False AMCG00016769
TU19390 lncRNA upstream 818038 29930664 ~ 30019687 (+) False G15605
TU19650 lncRNA downstream 67256 30905610 ~ 30906839 (+) True G15817
TU19680 lncRNA downstream 167543 31005897 ~ 31007006 (+) True G15847
TU19686 lncRNA downstream 194715 31033069 ~ 31033321 (+) True G15853
TU19814 lncRNA downstream 636953 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 641310 31479664 ~ 31481356 (+) True AMCG00016820
AMCG00016796 mRNA upstream 260128 30576421 ~ 30577597 (+) True AMCG00016796
AMCG00016795 mRNA upstream 267903 30564566 ~ 30569822 (+) True AMCG00016795
AMCG00016789 mRNA upstream 287295 30531032 ~ 30550430 (+) True AMCG00016789
AMCG00016791 mRNA upstream 309918 30515361 ~ 30527807 (+) True AMCG00016791
AMCG00016790 mRNA upstream 325426 30489771 ~ 30512299 (+) True AMCG00016790
AMCG00016797 mRNA downstream 85659 30924013 ~ 30949874 (+) True AMCG00016797
AMCG00016799 mRNA downstream 146119 30984473 ~ 31001821 (+) True AMCG00016799
AMCG00016805 mRNA downstream 234640 31072994 ~ 31103613 (+) True AMCG00016805
AMCG00016803 mRNA downstream 269075 31107429 ~ 31111908 (+) True AMCG00016803
AMCG00016804 mRNA downstream 275373 31113727 ~ 31129595 (+) True AMCG00016804
TU19453 other upstream 600884 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 724441 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 754197 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 762829 30072938 ~ 30074896 (+) False AMCG00016772
TU18924 other upstream 2732014 28104737 ~ 28105711 (+) True G15223
TU19688 other downstream 220986 31059340 ~ 31061145 (+) True G15855
TU19913 other downstream 883585 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 890202 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1660702 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1661222 32499576 ~ 32503256 (+) False AMCG00016854

Expression Profile