RNA id: AMCG00016800


Basic Information

Item Value
RNA id AMCG00016800
length 459
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00016800
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31012563 ~ 31015970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCCTGCAGTGCCTCCCATCCGACCAGGCCATATAAAAGAGGTTGGTTTACTCTCCTGGGGTTCCTCTCTTCTTCCTCTGGAAGATTTAGTGGAGCTGATGATGATTCAGAATGCCCAGATGCACCAGGTCATTATGAACAATATGACCATGTCAGCTCTAAATGCTTTTGGCTATTCACAGCCAACCCCACAGCCTCCCCCAGAGCCTCCTAGAATTCCCATAATACTGGAAGAAGAAGATCCCGAGCCTGTCTACTACCATCACTATGAGCCCCTGCCCTTCCCTGTGTATCCCTCATGGCCTCAGACCCCACAGCAAGCACGGCACTACCAAGAGGGTGGAGTGCATCATGTGGATTCCATAGCTTCTCCCAGCAAAGACATGAGGGCTGtcccacctccccctccccccagtgCAACAAGGACAGTGGGAGCAGACATCCCCCCTGCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19678 lncRNA downstream 10435 30998634 ~ 31002128 (-) True G15845
TU19567 lncRNA downstream 580565 30429929 ~ 30431998 (-) True G15746
TU19535 lncRNA downstream 775696 30233548 ~ 30236867 (-) True G15716
TU19527 lncRNA downstream 804026 30207687 ~ 30208537 (-) True G15711
TU19524 lncRNA downstream 807448 30204822 ~ 30205115 (-) True G15708
TU19687 lncRNA upstream 17100 31033070 ~ 31033320 (-) True G15854
TU19697 lncRNA upstream 87409 31103379 ~ 31106792 (-) True G15864
TU19730 lncRNA upstream 156215 31172185 ~ 31176602 (-) True G15890
TU19778 lncRNA upstream 354110 31370080 ~ 31379449 (-) True G15927
TU19783 lncRNA upstream 364577 31380547 ~ 31383730 (-) False AMCG00016815
AMCG00016801 mRNA downstream 4137 31003106 ~ 31008426 (-) True AMCG00016801
AMCG00016793 mRNA downstream 448969 30558256 ~ 30563594 (-) True AMCG00016793
AMCG00016792 mRNA downstream 454771 30551128 ~ 30557792 (-) True AMCG00016792
AMCG00016794 mRNA downstream 544759 30465157 ~ 30467804 (-) True AMCG00016794
AMCG00016780 mRNA downstream 770994 30236974 ~ 30241569 (-) True AMCG00016780
AMCG00016802 mRNA upstream 44381 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016807 mRNA upstream 161586 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016812 mRNA upstream 276312 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016811 mRNA upstream 320475 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016815 mRNA upstream 364676 31380646 ~ 31388268 (-) True AMCG00016815
TU19613 other downstream 483063 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 810212 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2227056 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3583912 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3608641 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1407088 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1481537 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1481537 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 2160106 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2410518 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile