RNA id: AMCG00016804


Basic Information

Item Value
RNA id AMCG00016804
length 2789
RNA type mRNA
GC content 0.52
exon number 19
gene id AMCG00016804
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31113727 ~ 31129595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCGATCCAAGTTTGTGCTTCAGTGCTTTCATTGGTGCAGATGAAAGACTCTAGGCGGGGTGGGAAAAAACGGGAGCACAATCTCACGAGAAAGAATGAGATTTACCGattattgtttacattgttaaaaaaaaataaaaaaaaaatagacggAGAGAGAACCGAACCGAATCGATCCGGATTAAACTAAATTTATCGGAACAAGGTCATTTCCGTGACGGAACACCTGGAACCGGGGCGAGATCCGACGGCCGGATTCTCAGGCACCCGATAAACACACTTCTTGGCAGCTGTTTGTTGATACCGATCCGGACTCACCCCGAAAGAAAACACGAAAGAAAAGTCAGCGTTTTGAATTCACCCATCCCAAATGAAAGACTGTAGGGGTGAGGATTTATTCGATCTAGTCTGAGCAAAGCAAGGAGAGtctgaggaggaggggggggggggcagcggTTGCAGAAGAACAGAAGCCCGGGGCTGCCCGCGCAGGGGGAGCGGCAAGGCGGGCTCGGGAAACACCGAGGATCTCTAGGCCGCGAAACGATTCCCCACTCCATCTCCAAAGAGCAGGGCCGTTGCGTCCGTAGCGAGACATCAGTGCCTCTATCCTGGACGTGACCGAGGTGGAGGACGGGGATTGTAACGAGGCCTCGTGTGGGAGTGTCGGGGGTAGCCGGGGAGGGCAGGAGGATACTGGGAATCGGTTCCCGGTGAGAGACCCTGACCTCCGGGGCCTGTGATAAACGACACCGCCGCAGaAATGATGGAAGAACTGCACAGTCTGGACCCTAGGCGGCAGGAACTTTTGGAGGCCAGGTTCATGGGAGTTGGGGTCGCCAAGGGTTCAGGTAACAATGAGTCCTCCAATCAAAGTCTGTGCAGCGTGGGCTCTCTCAGTGACAAGGAGCTGGAGacGCCTGAGAAAAAGTCAAACGATCAGAGGAGCCGGAAACGGAAAGGGGATCCATACGACACCAGTCAAGGGAAAGGAGGATCGAGAGGACACAAAATTAGCGATTACTTTGAGTTTGCGGGGGGCAGTGGTCCTGGCACAAGCCCTGGCAGAAGTGTACCCCCTGTAGCACGTTCTTCCCCTCAACATTCCTTATCCAACCCCCCCGCCTCGGTCCAGCAAGGTAGCCCATCATCCACTGGCTCAGCCAACACTGACCATTCCTGCAGCTCCCTGAAGCCAATCTCATTTCTGCACAAAGCAACACAGTCGGACCTCACGATAGAAAAGCTCAACGCgctggaaaacaacaagaactcTGATCTAGAGAAGAAAGAGGGAAGAATAGATGACTTACTGAGGGCCAACTGTGACCTGCGGCGGCAGATTGATGAGCAACAGAAGGTATTGGAAAAGTACAAGGAACGGTTAAACAAGTGTGTGACCATGAGCAAGAAGCTGCTAATCGAGAAGTCCAAGCAGGAGAAGATGGCATGCCGGGACAAGAGCATGCAGGACCGCCTCAGACTCGGGCATTTCACCACAGTGCGGCACGGAGCCTCCTTTACAGAGCAGTGGACTGACGGATACGCCTTTCAGAACCTCATCAAGGACCCCTACCCTTCAGTGACAATGACCAAGTCTGTCTCCTTCAGGCAACAGGAGAGGATCAACTCACAGCGAGAGGAGATTGAGAGGCAGCGCAAGATGTTGGCCAAGCGGAAACCACCGGCGATGGGCCAGATGCCAATGCCCAGCCTAGAGCAGAATAAACGGAAAAACAAGACCAATGGGGCTGAGAATGAAACGTTAACACTTGCAGAATACCACGAGCAAGAAGAAATTTTCAAGCTGAGACTTGGACACCTTAAAAAGGAGGAGGCCGAGATCCAGGCAGAGTTGGAACGGTTAGAGAGAGTAAGGAACCTTCACATCCGGGAACTCAAAAGGATACACAATGAAGACAACTCCCAACACGCCTGCAGGGAATACAGAATCCACAAAGAGCTGGATCACCCGCGCATTGTCAAACTCTACGACTATTTCTCCCTCGACACCGACTCgtttTGTACGGTTCTCGAGTACTGCGAGGGGAACGACCTGGACTTCTACCTGAAACAACACAAGCTGATGTCGGAGAAGGAGGCTCGCTCCATTATCATGCAGATTGTCAATGCACTGAAGTACCTCAATGAGATCAAGCCCCCTATTATTCACTATGACCTCAAGCCCGGCAACATTCTCCTTGTCAACGGGACCGCGTGCGGGGAGATTAAAATCACAGACTTCGGCTTGTCCAAAATCATGGACGACGACAGCTATAACTCAGTGGATGGGATGGAGCTGACGTCACAGGGAGCTGGAACCTACTGGTACCTCCCACCAGAGTGTTTTGTGGTAGGGAAGGAGCCCCCCAAGATCTCCAACAAGGTGGATGTGTGGTCAGTTGGTGTCATCTTCTACCAGTGTCTCTATGGGCGGAAGCCTTTTGGTCACAACCAGTCGCAGCAAGACATCCTTCAGGAGAATACCATCCTGAAGGCCACAGAAGTGCAGTTTCCCCCGAAGCCAGTAGTATCCCCAGAAGCAAAGGCATTCATCCGGCGCTGTCTGGCATACAGGAAAGAGGACCGGATAGATGTACTCCAGTTGGCGAGCGATCCATACCTGATGCCACACATCCGCAAGTCCGTGGCCACTACCGGAGCACCTGGGAATGCCATCCCCTCCACCTCAAGTTCCTCCAACAGCAGCGCCTCCAACTGATCTGCTGGAACTGCAGCTGTGAACCTGACGAAAAGCCctagtaaacaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08864 TLK; tousled-like kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19686 lncRNA upstream 80406 31033069 ~ 31033321 (+) True G15853
TU19680 lncRNA upstream 106721 31005897 ~ 31007006 (+) True G15847
TU19650 lncRNA upstream 206888 30905610 ~ 30906839 (+) True G15817
TU19550 lncRNA upstream 681933 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 898017 30213172 ~ 30215710 (+) True G15651
TU19814 lncRNA downstream 345712 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 350069 31479664 ~ 31481356 (+) True AMCG00016820
TU19822 lncRNA downstream 374484 31504079 ~ 31504552 (+) True G15966
TU19869 lncRNA downstream 485625 31615220 ~ 31644515 (+) True G15995
TU19924 lncRNA downstream 625447 31755042 ~ 31755427 (+) True G16037
AMCG00016803 mRNA upstream 1819 31107429 ~ 31111908 (+) True AMCG00016803
AMCG00016805 mRNA upstream 10114 31072994 ~ 31103613 (+) True AMCG00016805
AMCG00016799 mRNA upstream 111906 30984473 ~ 31001821 (+) True AMCG00016799
AMCG00016797 mRNA upstream 163853 30924013 ~ 30949874 (+) True AMCG00016797
AMCG00016798 mRNA upstream 275373 30837725 ~ 30838354 (+) True AMCG00016798
AMCG00016806 mRNA downstream 12813 31142408 ~ 31176537 (+) True AMCG00016806
AMCG00016808 mRNA downstream 54095 31183690 ~ 31230795 (+) True AMCG00016808
AMCG00016810 mRNA downstream 214419 31344014 ~ 31351176 (+) True AMCG00016810
AMCG00016809 mRNA downstream 234240 31363835 ~ 31370349 (+) True AMCG00016809
AMCG00016814 mRNA downstream 263576 31393171 ~ 31412053 (+) True AMCG00016814
TU19688 other upstream 52582 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 876886 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1000443 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1030199 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1038831 30072938 ~ 30074896 (+) False AMCG00016772
TU19913 other downstream 592344 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 598961 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1369461 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1369981 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 1371201 32500796 ~ 32503256 (+) False AMCG00016854

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU149333 True 924 lncRNA 0.48 9 NC_035909.1 10787508 ~ 10791280 (+)