RNA id: AMCG00016805


Basic Information

Item Value
RNA id AMCG00016805
length 2508
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00016805
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31072994 ~ 31103613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCATTAACGCTCAAGGTTCAAACATCTGTACGTCCCGAGGAGTGAGTACATGCAAGCAGTGCCTAGCTGTGCACCCTAGTTGTGCGTGGTGCTTTAAGGAGTCGTTCGACCAAGAATCTGCCACCGTGTCTCGCTGTGACCTGCAGCGGAATCTGCTGGAGGCCGGATGCAGTGCAGACTTCATTGAGTTTCCAATCAGCACCTTAAAAGAGCAGGAGAAAAAGCCACTGAGTGACAGGGGCTCTGGTGCTGCCTCAGATGCCACCCAGATCAGCCCCCAGAAACTGCAGATCACCCTTCGTCCTGATGACTCCAAGATTTTCAATGTGAAGGTGAAGCGAGTGGAGGACTATCCTGTGGATCTCTACTACCTGATGGATCTCTCGTACTCCATGAAAGATGACCTGGAGAAGCTGACAACATTGGGCAGCAAACTGGCCGATGCGATGGGCAAGACCACCTCCAACCTACAGATGGGCTTTGGGGCCTTTGTGGACAAGCCCCTCTCTCCATACATGTTTATCTCCCCCCCAGAAGCAGTGAGAAACCCCTGCTATGGTATAGCAACAACGTGCTTGCCGCAGTTTGGCTACAAGCACGTCTTGACTCTGACAGAGGAGGTGAGCCGTTTCACAGAGGAAGTGGAAAAGCAGAGAGTATCCAGGAACAGAGACGCGCCAGAGGGGGGCTTTGATGCCATCATCCAGGCCGCTGTTTGCAAGGAGAAGATAGGCTGGCGCCATGAAGCTACTCACCTCCTGGTGTTCACCACTGATGCCAAGACGCATATAGCTCTGGATGGCAGGCTGGCTGGGATAGTACAACCCAATGACGGGCTGTGTCATGTGGGACCAGACAATAACTATGACAAGTCAACCACACTGGATTACCCTTCCTTGGCCTTGCTGACAgaaaaaatgtcagaaaacaaTATCAACTTGATTTTCGCCGTTACCAACCCTGTGGTTGAGCTGTACCAGAACTACAGTGAATTGATTCCAGGGACTACAGTGGGACTATTATCAGATGATTCAAGCAATGTGATCCAGCTTATTCTAAATGCTTATGCTAAAATCCGCTCCAAAGTAGAGCTGGAGGTGCAGGGTGTGCCAGAGGAGCTCTCCTTGGCCTTCAATGCCACCTGCCTGAATGGAGAGGTCACCCCTGGGCTGAAATCCTGCTCCGGCCTCAAGATAGGAGACATGGTGTCATTCAGCGTTGAGGCTCGTGCTAGGGGCTGCCCCAAGGAGAAGACTAAGACCTTCACCATCAAGCCCGTGGGCTTGAAAGACTCCCTGCAGATCACCGTTAACTTTGAGTGCGAGTGTCAATGCCAGGCACAGGCCCAACCTTTCAGCCCGCTCTGCAACAATGGCAATGGGACTTACGAGTGTGGCATCTGTCAGTGCCACCAGGGGCGGCTGGGCCCACGGTGTGAGTGCTCCGACGGTGACTACAGCCCCAGCCAGCAGGACCAGTGCAGCTCTAACAAGGACGGCCCTGTCTGCAGCGGCCGGGGCAACTGCGTGTGTGGCCAGTGCGTCTGCCACGCCAGCGACTTTGGCAAGATCTGGGGAAAGTTCTGTGAGTGCGATGACTTCAACTGCCTGCGCTTTAAGGGAGAACTGTGCTCAGCTCACGGTAAATGTTCCTGCGGGTACTGCATGTGCAACGCTGAATGGAAGGGCGAGAACTGTAACTGCTCCACCCGCACTGACACTTGCATGTCTGGCATCGGCCTGCTATGTAGTGGGCGCGGCCAGTGCATCTGTGGCACCTGTGAGTGTACCCAGCCGGGTGCGTACGGACAAACCTGCGAGAAATGCCCCACATGCCCAGATGCCTGCACCTTCAAGAAGGATTGCGTGGAATGCCAGCATTTCAAGCGTGGCAGTTTGTTCGATGACCACAATACCTGTTCCAAGATATGCCGAGACGAAATTGTTCTGGTAGATGATCTCACTAAGCAAGACACGAATGCAGTGAATTGCACTTACAAGGATGAAAATGACTGTGTGGAGCGATTCCAGTACTATGAGGACGCCAGTGGAAAGTCCATCCTATATGTGGTCAAGGAGCCAGACTGTCCGAAGGGCCCCGACATCCTGGTGGTTCTGCTCTCAGTGGCCGGAGCCATCCTTATCCTGGGCCTAGCAGGCCTGCTCATCTGGAAGCTCCTGATCACCATCCATGACCGCCGCGAGTTTGCTAAATTCGAGGAGGAACGTGCCCGGGCCAAATGGGACACGGGTCACAACCCTCTGTACAAAGGAGCAACCTCTACCTTCACAAACGTGACATACCGTGGCAACACAGAGTGACACCGGCGCAGCcaatcagaaccagcattactCAGGATTCTGCTAGCTTGGAGCCAATCGGGGAGCAGCAGGGGATAAGACTGTTTAAAGAGCTGTGTTCAGTTCTGGTTCTCTTCAATTCTTGGTAGCCAAATGTAATGTCATCCCTCGGgtgtaaaacattataataatagagGGTGGGAG

Function

GO:

id name namespace
GO:0070527 platelet aggregation biological_process
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007044 cell-substrate junction assembly biological_process
GO:0030334 regulation of cell migration biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0060055 angiogenesis involved in wound healing biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06493 ITGB3, CD61; integrin beta 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19686 lncRNA upstream 39673 31033069 ~ 31033321 (+) True G15853
TU19680 lncRNA upstream 65988 31005897 ~ 31007006 (+) True G15847
TU19650 lncRNA upstream 166155 30905610 ~ 30906839 (+) True G15817
TU19550 lncRNA upstream 641200 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 857284 30213172 ~ 30215710 (+) True G15651
TU19814 lncRNA downstream 371694 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 376051 31479664 ~ 31481356 (+) True AMCG00016820
TU19822 lncRNA downstream 400466 31504079 ~ 31504552 (+) True G15966
TU19869 lncRNA downstream 511607 31615220 ~ 31644515 (+) True G15995
TU19924 lncRNA downstream 651429 31755042 ~ 31755427 (+) True G16037
AMCG00016799 mRNA upstream 71173 30984473 ~ 31001821 (+) True AMCG00016799
AMCG00016797 mRNA upstream 123120 30924013 ~ 30949874 (+) True AMCG00016797
AMCG00016798 mRNA upstream 234640 30837725 ~ 30838354 (+) True AMCG00016798
AMCG00016796 mRNA upstream 495397 30576421 ~ 30577597 (+) True AMCG00016796
AMCG00016795 mRNA upstream 503172 30564566 ~ 30569822 (+) True AMCG00016795
AMCG00016803 mRNA downstream 3816 31107429 ~ 31111908 (+) True AMCG00016803
AMCG00016804 mRNA downstream 10114 31113727 ~ 31129595 (+) True AMCG00016804
AMCG00016806 mRNA downstream 38795 31142408 ~ 31176537 (+) True AMCG00016806
AMCG00016808 mRNA downstream 80077 31183690 ~ 31230795 (+) True AMCG00016808
AMCG00016810 mRNA downstream 240401 31344014 ~ 31351176 (+) True AMCG00016810
TU19688 other upstream 11849 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 836153 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 959710 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 989466 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 998098 30072938 ~ 30074896 (+) False AMCG00016772
TU19913 other downstream 618326 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 624943 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1395443 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1395963 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 1397183 32500796 ~ 32503256 (+) False AMCG00016854

Expression Profile