RNA id: AMCG00016806


Basic Information

Item Value
RNA id AMCG00016806
length 4666
RNA type mRNA
GC content 0.54
exon number 33
gene id AMCG00016806
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31142408 ~ 31176537 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACCCGACTCAccgtccctctctccctcgaCTCCATCACTCCATCCTGGGGGGAAAACAACACCTCATTCGCCCTACCTATTCGTACAAAACCCGGGCATGCAACGCAGCGACCGTCACAAGACTTCTCCATGGAGCCACTGCTTTTACTTTTACAGATGcactttatatttatgtatcctTAGTCTGGAACTGAGGGTTGCCATCTCAGacAAAGATGTGTTCGGTTTCTACAATGAAAAGCTGAAGGCCTGCCTGGGCGTCCAGTCCTCCAGCCTGTACATCTCCGAGCACTGCAACAACACGTCGCACCAGTGGAAGTGGGTGTCACGCCAGCGACTCTACAACCTTGGCTCCTCGCGCTGCCTGGGGCTCAATATGGGCAACAACAGTGACTCTGTCCTGGACATGTACCCCTGTGACCGCGAGTCAGCCAGGCTGCGATGGAGATTCACCTGCCGGGAGCTGCTGGACACACTAGATCACTTCCTGCCACACTCGCTGGGGGGCAACCTCTCCCAAGCCCTTTCTAAGTGGAAGGTGTACGGCGAAGACCAGGACCTGTGTGGCAAATACTACCGAGAGATCTACACCATTCAGGGGAACTCTCACGGCCGGCCCTGCACCATCCCCTTTATGTACGACAACCAGTGGTTCCACGAGTGCACCAGTATAGGCCGGGAAGATGGACACCTCTGGTGCGCCACCACCACAGACTACGGAAAGGATGAGAGATGGGGCTTCTGCCCAGTCAAGAGTCCTGGCTGTGAGACCTTCTGGGACTCAGACCCCGTCACCAAAAGTTGTTACCAGTTCAACTTCCAGTCCACCCTGTCCTGGACTGAGGCTCGTGTCAGCTGtctccagcagggggcagaCTTGCTGAGCATCACCGAGCTGCATGAGCAGACCTACATCAACGGTCTGTTGACCGGTTACAGCTCCTCCCTTTGGATTGGCCTCAACGACCTGGACATCAATGGGGGCTGGCAGTGGTCGGACTCCTCTCCTCTCAAATACCTCAACTGGGAGACAGACCAGCCAGATCAACAGGACCAGGAGAGCTGTGCGGTGATTCGGACTGAGACGTCTGGGCGCTGGAAGAACAAAGAGTGCTCCATTGCTCTGCCCTATGTCTGTAAGAAGAAACCCAATGCCACCACGGATCCCTTCTCCACAGGAGATTCCTGGGTGGAGAAGGACGTAGACTGTGATGTGGGCTGGAATGCTTTCCAGTCCAGCTGTTATCGTGTCAACGTTGAGAAGATGGTCTGGAAGGACGCGCAGAAAGCCTGTCAGAAGATGGAGGCTGGCCTAGTGAGCATCCACACTCGGACCGAACTGGATTTCATCATGAAGAACTTGACACGTGATATAGATCAGCTGTGGATCGGGCTCCATGATACCAGGATGCAGATGAACTTTGAGTGGACAGATGGCACCCCTGTCCTCTTCACCTTCTGGAATCGCTTCCAGCCAAACACCAACAGCACCAAAGAAGAAGACTGCGTCACCATTGGTGTGCCTCCAGGACGGTGGGAAGTCAAAGCCTGCAATCTGTCCCTGCCGTCCGTCTGCAAGAAACAGGGGCACAAAAGTGACAGCAAGGTGCAGGTTAATGGCTGCTCAAAGGGCTGGAAGTGGCATAGTCCATCGTGCTACTTTCTTGGAGAAGAGCCATTGAATTTTGAAGAGGCAAAGAAGGCTTGTGTGAACAAAGACGCTGCTCTGGTCACAATTACCAACAGGTTTGAGCAGGCCTTTGTGAACAGCATGGTGTACGGCCGCACAGGGGACTATTTCTGGACTGCTCTCCAAGACCAAAATGAGACGGGCGCCTTCCATTGGCTGAGTGGAGATGAGGTCACCTACACCAACTGGAACCATGACCAGCCAGGCTTCGACAAGGGTGGCTGTGTGGTGCTGGCAACGGGCAGCGCTACTGGACTGTGGGAGGTGAAGGACTGCAGCTCTACCAGAGCCAAGTACCTCTGTCGCCAGAACACTGGGCCCTCCGAGAGCCCAGGGCTGCCCATGCCCGCCCCTACACCAAGCCTCACAGGCTCCTGTCCACAGGAATGGAAAAGCAGCAGCACACTGCACCACTGCTACAAGGTGTTCCATTTCCCCGAGCTGGATCAGAAGCTCAACTGGATGCAGGCCCACTTATACTGCCATAAGCACGGGGCCCAGCTTCTGAGCATCAGCAGCTTCGATGAGGAGCAGTTTGTGGCCCAGATCCTCCACGAGACCTTTGGAGAGTCGGAGGACCATGAGCAACACTGGTTCTGGATTGGTCTGAACCGTAGAAACCCGATGGACAAGGGCAGCTGGAAGTGGAGTGATGGCTCAGGGTACTCCTATCACAACTTTGGACGCTATTACTATGAGTATGACAACAGGCAGTGTGCAGTGGCAGACTTGGGCACCATGCAGTGGCTGGCGATGCAGTgCACACATGTGAAGGAGCCTGAAGAAAATGAAGGTGGGGGCAGCAAGGAGTGGGTGACCTTTAAGGATGTGGAGTTCAAGTTCTTTGACCATCGGGCCACCTGGGAGCAGACCCAGCGCATCTGCAGTTGgTGGTCGGACAAATCTGTGGTGGACTATGTGGCCTGGGCTCCTGGCAAGCCACGCCCCGTGAGCCGTGACAggaagtgtgtgtatatgacaGCCGGTAGAGgGGAATGGAGTGACCAGAAGTGCTCTACTGATCTGCCCTATGTATGTAAAAGGGTCAACAGGACTCAAACAACCCCGACCACCCCTTCTCTGGTGCCCTCTATTGGGGGATGTCCAGAGGGCTGGACCCTCTTCCTTAACAAGTGCTACAGGATATACGGCGAACAGGAGACAAGGAGGGTCACCTGGGCCAAGGCAAAGACATTCTGTGAGATTCAGGGGGCAGTTCTGGCCACAGTTTCCAATCACCTTGAGCAAGCCTTCATCACCACCCTTCTGTCTGGTGTGACCTTTAACCTCTGGATTGGCCTGTCGGATTCTGAAAGGAAATTCCACTGGCAGGAAAAGGAGTCTGTGATGTATGTCAACTGGGGCCCAGGACAGCCCACAGGATACCAGGCCTCCATGTTAACCAGGACCCCGATGAACTGTGCTGTGATTTTACATGGAAACCCCCAGAGGAACACAGGCTACTGGGCAGTGAAGGGTTGTGATGAAGAAAAGCATGGATACCTTTGCCAGAAAAAGAAAGATGTTTCGCTCCAAAGTCAGGTGaatcccttccctccctctctcactggACCCCTTCAATACCGGAACATCTCCTACCGCATCCTCCAAAAGCCCCTGGACTGGGAGGGAGCAGTGCATCTGTGTGACACTTTGAACGCCAGCCTCACTTCCATACAGGATCCTTATCAGCAGGCCTACCTCACCCAGATCCTCAGCGCCCTCAATGTGCCCACGTGGATTGGCCTCTACAATGATGGGgGCCGAAGTTACTTGTGGCTTGGGGAGGATCAAGTGTCCTACACAGACTGGCGCGAAGGGGAGCCCAGCCAAACCATGGGCTGTGGGTACATGAGCGCCACGGGCAAGTGGGCTGTCAGAAGCTGTGAGACTAAGCTGAAGGCTGCCATCTGCCAGCTGAACAAAGAGCCGGTGAAAGAGCACAAGTGGACTTACAGTGGACACTGTCCCCATACCCTGGAGGAATCCTCTTGGATCCCCTTCCGCAATCACTGCTACTCCTTCCACCtggaaaaactcactccacaaaAGGACGCTGCTGAGAAATGCAGGAAAGTGGGAGCTCAGATGCTGTCCATAATGGACGAGACAGAGAACAGCTTTGTGTGGGAGCACATGCAGGCCTACCAGGAGCAGGCACACGGTGCATGGCTTGGAATCACCATGAACCCCAAAGGGGGCAATCTGGTGTGGCTGGAGGACACGGCGGTAGAATTCACAAACTGGGGGACCCAGGACTCCAACCTCAGCATGCTGAGTCCCAACTCCTGCTTCTGGATCCAGAGCAACACGGGTATCTGGAAGCTGGGCTCCTGCAATAATAAGACCCACGCCATCATCTGCAAGAGGACGCGGGATGCAAAAGCTGAGCAGACATTCATTGAACAGGATCACATGCCCACCTTCGTGATCGTGATCGTGACCGCTGTGGCCCTGTGCCTCTTCATCATGGCCGCCATCTTCCTGTACAGGAGGCGGAGCGGTGGGGCACGGGGGGCCTTCGAGGGGGCACGCTACAGCCGCACCAACTCCGCCCCCACGGAGTATTCTTTGGTCACAGCTTTCACGATTTACATTCTGCTGAGGTTGAAGTATCTCATGGGGGGCCCCCCCGCCAGGATCGATTGTGGTTTGAGTTTCAGTGAGTCTGTGGAAGTGTTCGCCACGGGAACTCAACAcgatgaaaaactaaaaagaaagacCGCTTTGtataagcaaatgcatttgaaaaagaaatcaGAACTCATTGTGGTTTTCTTCATCAAGCTGGTCCCTTCACTACCAGAGTACCACAAAAAGTCTCCAGAGAGCCCCAGTAGAGCTGAAAGAGTAGCATCATCTCTTTGGATGTGGGGTGTTCGTATGCCTCAGCGCTGGCTCCTGGTGGTGACTCTGTGTATTGCTCAGGTGGTGGCTGTGTTGTCTGAAAGGATTTTGTTCATTCTGGGATAG

Function

GO: NA

KEGG:

id description
K06560 MRC, CD206, CD280; mannose receptor, C type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19686 lncRNA upstream 109087 31033069 ~ 31033321 (+) True G15853
TU19680 lncRNA upstream 135402 31005897 ~ 31007006 (+) True G15847
TU19650 lncRNA upstream 235569 30905610 ~ 30906839 (+) True G15817
TU19550 lncRNA upstream 710614 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 926698 30213172 ~ 30215710 (+) True G15651
TU19814 lncRNA downstream 298770 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 303127 31479664 ~ 31481356 (+) True AMCG00016820
TU19822 lncRNA downstream 327542 31504079 ~ 31504552 (+) True G15966
TU19869 lncRNA downstream 438683 31615220 ~ 31644515 (+) True G15995
TU19924 lncRNA downstream 578505 31755042 ~ 31755427 (+) True G16037
AMCG00016804 mRNA upstream 12813 31113727 ~ 31129595 (+) True AMCG00016804
AMCG00016803 mRNA upstream 30500 31107429 ~ 31111908 (+) True AMCG00016803
AMCG00016805 mRNA upstream 38795 31072994 ~ 31103613 (+) True AMCG00016805
AMCG00016799 mRNA upstream 140587 30984473 ~ 31001821 (+) True AMCG00016799
AMCG00016797 mRNA upstream 192534 30924013 ~ 30949874 (+) True AMCG00016797
AMCG00016808 mRNA downstream 7153 31183690 ~ 31230795 (+) True AMCG00016808
AMCG00016810 mRNA downstream 167477 31344014 ~ 31351176 (+) True AMCG00016810
AMCG00016809 mRNA downstream 187298 31363835 ~ 31370349 (+) True AMCG00016809
AMCG00016814 mRNA downstream 216634 31393171 ~ 31412053 (+) True AMCG00016814
AMCG00016813 mRNA downstream 241444 31417981 ~ 31420976 (+) True AMCG00016813
TU19688 other upstream 81263 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 905567 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1029124 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1058880 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1067512 30072938 ~ 30074896 (+) False AMCG00016772
TU19913 other downstream 545402 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 552019 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1322519 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1323039 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 1324259 32500796 ~ 32503256 (+) False AMCG00016854

Expression Profile