RNA id: AMCG00016808


Basic Information

Item Value
RNA id AMCG00016808
length 7209
RNA type mRNA
GC content 0.46
exon number 23
gene id AMCG00016808
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31183690 ~ 31230795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaggcaAGGTCACATGACATGTTGTTGCGGGAAAATCTGAAAGGAAGAGGAGGTGCCACTAGATAATGCGAAAAatTGATGCATTCAAAGCAGACTGAATGGCGGCTCCTAAAGGTAAAGTTGAGGATGTCAAACAGGTGCTGTCAATGATCCACAAAAATCTGCAGTGTCCTATATGCCTGGATCTGATGAAAGAGCCCGTTTCTACAAAATGTGACCACCAGTTTTGCAGGTTTTGCATGTTGAAGCTGCTCGGCAGAAACAGAAAGAATGTGGCAGAGTGTCCACTCTGCAAATCGGAAGTCACTAAAAGAAGCTTGCAGGAGAGTCCGCGATTTAAGAGGCTGGTTGAGGGACTTCTGAGAACCATCCATGCCTTTGAACAGGACACAGGAACTCAGTttttcacAGGATCCAAGTTATCCATCTGTGCCCCTGAGAAAAACTCCTATGAAGAACTGAGGGAATATGATGGCGTTATTCAAAGCACAGGTTACAGGAGCAGAGCGAAGAGAACCACAGCAAGCAATGCGTCCAAAAAGGCCGACATGCAAGAAGTGTTGAAGGATGGAGTTGTCCGGAAAGCtgaccaaaaaactaaaaagcagaTGCTGGAAAGTCTGGTGCCATTGGAAATGGATTCCTCAGAAGAGGACCTGCTTCCTGGGCAGCACACGACTGGTTCTCAGGAGCCTGCATGCATTGAAGCTCAGCCAAATGGGTTTGAGGCCCTTGCAGGAAGTTCGTCCTGCGAAAGGCTGCATGTCGGACTTACTGACAGTGGGTCTTGGCAGGATCACGAGGCTGCGATACCATCTCCAGCAGCGGaGGAGGATTGTTTGGCAAAACTAATGGATCTGGATGATGCCTCTTGTTTAACAAATTCTGGGACAGCTGTATCTGGTTCCACAGTGGCAGTGGTTAAAGAACACAAGGGTCCTGCTGACATGACTGACTTCCCAATGGAGCCCAAACCCAACACTGAAATCGACCTCAACCTTTGCTCTtccaagaaagagagagagccgAATTCCACCTTTTCAGGGAAAGCTTCAAAGGATGGAAAACGCAAGTCAGGCAGGAGTAACAAGAAGTCGGTCTCCACTGGAGGCCAGGACTGCTTGGGTAAAGACAAAAACTCTGGAGAGAAAGTGAAAGGGGGTCATTCAGATGCAGGGGACCACCTCCAAGAAGCGTTGGGTTTAGCCAAGGTTGTTTCGGACAAAATTGTGGAAAAAAGACGGAGGAGGAGTATTCAGAAGGTCTCTGAGTGGCTCTCTGGGATCGATGATCCCATATGCTCTTCTGGACTACAAAACAGTGAGGATGGTGCTGATTTTCAGTTGGAAGAGTGTGATTCTGAAGGGGATTCCACTGAGACGCAGAAGTACGAAGAGGTGGCAAAGGAAGAGTTGGATAGCCTGAAGAAAACTGACCGCAGGACATCTCTGGAAAACCAAATATTTGGGGTCGTGTACAGGAGAGATCGGAAGTCAGACACTCAGGTTAACAAGAGCATTTCTTCTGATGATAAAAGAACATGTGACCCCCCTTCAAGTAAAGAACGCCAGGTGGACAAGAAAGCCAGCAAGAGAAAATCTAATGAGTTGACTCCTGCCGACTTCATCAAGAGACCTCCTGCTTTAGATGACAAGAGTACCACTGGTGAGCAGCCATTAGAAGGCAAAGATCAACAGTGCCCTGCCAAAAGTGACAATGCCAGCTTACTCTCAATGGAGGGGGAAAACGATAAGAGAAAAGAAAGCCCTTCTTTTGATTTTACGCATCAAACAATAGCAAGGGCAGAGAAAGCTGATGTAAGAGCCTCCTGGAAGAACATAAAAGATGACATGCCACAAGAGTGCACAGAgagcacaggaaaaaaaaacaagtctaaTAGAAGGGATAGTGTGAAAAAGAGTGCATCAACAACTAAGAAGGCCACCAAGGCAGCAAAGTCCCTAGAACTGGTTACCTGCCAGCTGACTGATGATCATCAAGTGTTACACATTGCTGGTCCACAGGAGCTTGCTTCTAATGAGAAGGAAGTCCAGATTGAGAGCTACCCGAGCAGTGAAGATCCAGCAAGCGCCATCATCGAGTCCAGGGCAATTCGTAGGAGCAGGAGGCTGCAGCTTTTCACGGAAGAGGTACAGGCTACTAGTAAAAGGCTCCGATCTGAAACTGCAAAATTTAAACCATATACAAGTGCGGAAGCTGAGAGGGTTTCTGAGGGCTTTGAAAATGAGCAGAGTTCTGCACAACTTGACCAAGGGAGAACGCAAATGGTTGAAAGCACCGTTCTCCAGCAAGCTGATAAAATTAGTGCAAAACAGGTTGGAGAGTTGAAACCAAATCCGGTGGAAATAGCTGCTGGCAAAAAAGGCATTGAACAGCACCTTGTGGAGATGATTGTGGAAAAGAGCTCTCAGATTTCAATGATCCCCAATACAGAATCTCCACAGACTTCCAGCAATATCATCGATCCTGCTCCACCCACTTTGGAAATCTCAGCAGTTCCTGATACGGGAGCAGATGTGATGGTGACAAATGATTTGCTCTGTGCCGAGCTGGCTGAAGGTAAGAACGATAGCGAGTTGGACACAGAACAGCTTTTGAAAACCTTCAAGACCACCAAGAGAAGGTCCTTTAATTTGCTGCCAAGCCCTGATCACCCACCTCAGGAAAACAGACAATCTGAAGACCAGGTATTGTCTGGCAAAAGTccagaagaagcagaagaaggaAAGGACACTTGTGAGAGAAACCCTACCAATTCAGAGAAACAATCAGAGCGGTGTTGTGTGGCAGAATTTGTGAAGTCACCCGGGTCAAAGATGGATGTTTGTGCTTCTCTGAAGCAAGTGGACCTTGAGAACTTTGGTGGCAGTGATGTCATTCCACCTACAGTTCCTGTTCCCCGGAGGGAAGCTTCATCTCAGAAAAGCAAAGACAGTGGTGTAAAATCGCACAGTCTGACAAAAGGGCAGGTCCGGACCAGAAGCTGTTCCAGAGCAGCTGAATTTGGCGAGTGCTCAGATCCCAACTCCTGGAAGAGTTCCGACTGCAGTCGCAGAACGAGAGCTAACCGCAGCAATGGAAACTGCACTGAGTCTGTTGAAGTGTCAACTTTGGGGAAAGCAAGAAGGACGAGGAAAAGCTTAAATCAGTTCCCCTCAGTGTCTGACTCTGGGCTTCTCTTCTCAGAAACTCCTGAGGACCACCAGAATCCGACTACTGGAATCCCAGCGACAAAGGAGTCAATGGTGGAAGATGGGAAACTGAAGAGGAAAACATTGGACAGCTCAGCAGGAGATGGTGAAAGTGATGTTGTGCATAGTTTTCATATGCCTGCTAAGATATCTCAAGAGTCGTCCATGACCCCAGATGGCCTTTTGcctccacattttgttgttgataaTGGAATGTGTGATGACGGACAGGGACAGATGATGGAAAGCAAAGATCACTTAAGCCAGCAGTCCCCAGCTGCCAAGCCAAGGAAGAGACGGAGGGCCCAAAGACTGGAGTCTTCTGATTCAGACTCCAGTTTTGACGAAGAGCTTGTACCCCTTGCAGTATTGTTTGGCTCAAAGAGGCCTCCCGGCTTGCCTCAGCAAGATCCTTCACTTCAGGAATGTGGCTTCCCAGATAAGATGGCCACCTCTCATGTTCTTGTTGAGCGATCAGCTGTCATCATGGTCTCCAGCCAAGACAGTTTCCCAGGTAGCCAAACATCTGTAGATCTGTTCTCCACACAGTGGGGCCATTCCAGTCAACTGGAGCAGGTCACAGAGCTGTCGAGAAGCGCTCCACTGGATAGATGTTCACCAGTTAACTCTCCCAATGACAGCTGCCACAGTGTGGAGGAGAACGGAGCGGACAACAATGGGCATTTAGAGGGAAAGATCGGTGAGGCTGCAGCATATGATCGTGAGGCCAGTCATCCAGTGGAGTCCCCGTTGCTGTCTTCTCAAAGTGAAATTCTCACCACTCAGCAAAAGGACACCATGCAGAAGGACCTGAGGCGGCTGGAGCAGGAAATGGCATTACTGGAGGCTGCCCTGAAGGAGCAGAGGAGCCCCGAAGCAGCCTCTCCTGCCAGGAAGAGCATCTGTCTTCCACCAAACTCCCAGGGTACGGCAGCCACAGGAGAGAAAGAAAGCCGTGACCGCCGCAACGCTGCAGTCTGTGTCAGAATGGAGAGTGAAGGGACCTCGAGTGAAGGTGAGACTCTTAGGTCAGAGGCTCCCAAACAGCTTCCTGTCTCTCCGGTCTGCTTACTTGCAAAGAGTAAAATGTCTGACAGTGAGCCGGTCGCCTCCAGTCTCCAGCCTGAGCAGAAGCAGATGGGAAGCCGGGCTAAAGACAAAAAGCAGGAGATGCCAGGGCGCCTCTCTGTGACAAAGCTCAGAAACGGGAGCACCAGACAGTCTGGAAGTGACCATGTGTGTGAGAACCTGAGCCCCTCGTTGAGACCGCAGGAACGAGACCGATCAATGAATCCGCCTGGCTGGGCAGGGCCGGCAGCTCAGGAGCCTGGTAGACGTCAACCCCAAGAGAGACCGGCTCCGTCTGCTGTGACTACAGACACCAGGGATTGTAGGAGCTCATCCTCCGGGAGGAAAATGTCTTTTGTGGCGTCTGGATTAAACCGAAACGAACTTATGCTGGTGCAGAAATTTGCCAAGAAAATGGAGAGCACTCTGTCATCGCAAGTCAACCCAGGGACAACCCACGTGATCATGAAAACGGatgGTGATCTGGTGTGTGAGAGGACACTCAAGTACTTCCTGGGAATCGCAGGGAAGAAGTGGGTCGTCAGCCACCTTTGGATCGTGGAATGTTTCCGGCAAGGTCAAGTGCTTGATGAGGCCAAGTTTGAGGTGCGAGGAGATGTAATCAACGGAAGAAGTCACCAGGGACCCAGGAGAGCGAGGACCAGTGGGGATGAGAAGCTCCTGTTGAGTGGCTACGAGATCTGCTGCTATGGATCATTTACTGACATGACTGGAGggcAGTTGGAGTGGATGGTGGAGTTATGTGGAGCAACAGTTGCTAAAGAACCTTTTCTCTTCACTTACAACCCAGGCAGCACCCCAGTGATTGTGGTACAGCCAGACTCGGAAGAATCGCAAAAGGACTACCGAGCTCTCAAGAGGAAGTACAAGGCCAGTGTGGTGACAAGGGAGTGGGTCCTGGACAGTGTGGCCCTCTACAGTTGTCAGAGTTTAGGTGACTACCTACTGGATCCTCTCCAGTGACGGATTCTGCCACCAGCAAGCCATAGCTGCAGCGTCTGATCTAGAACCTGTGGCGTTCTCctgaggaaaaaactaaaatgacacTACAAGACCTCGTGCACCACTGTGGATCTTACTTAATTAGAAACTACTCTTGCATGATGTATTTTGATCCTTCGTACCTTTTGAGAGTAATATGGTACATAGTGGAAATATGGACCATTGTCCGCTACAACCgaaacaaatgttttagtgTTGCCTTTGCTAACACATCCTCTGCCAGGCTGACACAAgctcagggggaaaaaaaattaaagtccCTCTGAGAATCCTCAAAGCCAAGCTCTACTATATAATGAATTAAAGAAACAGATCCCAAACCTTAGCTGAAAGTATTCCAAAGTGTTTCTCATTTGCCATAATTATAGGTCTCTGCAATTAACAATGCCACctaatagtaattataataataactattacaaaattgtaatacaacattttggctcttgtttgtgtgtttgcaacACGCAAAATATTGGGCATCCAGAGTCCAGGAAGATAGAAAGAGGATGAAATGGGACCCGTTTGTTTATTGCAGTCATTGAAAAATTAATCTAGGTCCTTTGTTAGGCCACACAGGACCATAAGGCCCTCAAAACCAAACATTACTCAATCAACCCTCGGGAGGTTTCCAATTATAGCCTATCATCCAGGGAAGAGTAAAGACCAAATTTTGGGTTGCCACAGGGAGCAAGTGTTCGACAGCATGGGGCGGTATGTTCAGCTGTCACTACCAATTTAAACTACTCTCTTTTTATCTGGAACTCTCCCTCTCATCCTCCTCTTCAAAACCTTGACCTCAAAATATGAAgtcttatttttctgttggaAGAGTTTTATTTCCTCTTGGTGGAGATAATAGAGGGGTGTCCAAGATTCTGAAGTTAAAGTGACCTCAGACTTCACCATTTATGTGCAATTTGCAGTActttgtcaaaaaacaaaattgatcaaaatagttgcttgcaatgaaaatgtatttttcgtTCGTTGCAGGTTGAAGTCATGGTCGCGTAATGTGGGCGGTGATTGACAGACTGAGGATGGTTTTAATCTAGACTGCTGTCTGATTATTTGGCAAGATTTATTATGCTAGTGCATGAGGAGCCATTGTTATTCTAAAGAGGATAGCAACCTGCTGGTATTTTTTGAGAGGTTGTTTTAAGCGTTTTCAAAACTACTGATTAAAGCATTTTTCCCTTCTTTAAAGAATTCAGGCAAAATCAAAAGAAGCCTGCTACATTTTAGAATATGTTTGATGTTCTGCCCTTGAAGAAAACATGCTTTGCTGGCTCTGAGAGTGCCAATGCACAGAAAGAGGTGGCATCTTATGCATTAATAAGATCATGGCTTTTTCCACAGCACTTcatgaaatattcaaattttgCTTACCTATTACTCTCTTCTTACTCCTGAATTTGTTTGAAAATTCTCAGTTTAAAAGTGTCAAATTGACCCATCTTaaccacttcctgtttactcacagcaaaaataagttatttaaatgacaattcTTGTGGGGCTACTGCTAAAAGATTTATCTTAGCTATGCAAGAAATTATGGATGGATCGAAATGATGACAATCAGGATCAATCAGGATCAAAAGATCATTTGACTGAACTGGTTACTAATTActtgtgcattttaaagcaatattcTTCCCAAACTGAAAAAGTCGACTACATTCTCtgcataataaatgtaattttgataTTGTCAACATTATCTGTGTGTATTGCAGTTCAGCTATAaagttttgtttccttctgtttGTGCAATTCCAGGCTGAGCTCTGTAAGcttgttttttacatttgtataaaaacaaaaaaggaagctATTTCATTTGTGATTCATTATTACTGTACTTGTATCTCCTAAGGAAACAATCTTTCCTCTTCACTT

Function

GO: NA

KEGG:

id description
K10605 BRCA1; breast cancer type 1 susceptibility protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19686 lncRNA upstream 150369 31033069 ~ 31033321 (+) True G15853
TU19680 lncRNA upstream 176684 31005897 ~ 31007006 (+) True G15847
TU19650 lncRNA upstream 276851 30905610 ~ 30906839 (+) True G15817
TU19550 lncRNA upstream 751896 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 967980 30213172 ~ 30215710 (+) True G15651
TU19814 lncRNA downstream 244512 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 248869 31479664 ~ 31481356 (+) True AMCG00016820
TU19822 lncRNA downstream 273284 31504079 ~ 31504552 (+) True G15966
TU19869 lncRNA downstream 384425 31615220 ~ 31644515 (+) True G15995
TU19924 lncRNA downstream 524247 31755042 ~ 31755427 (+) True G16037
AMCG00016806 mRNA upstream 7153 31142408 ~ 31176537 (+) True AMCG00016806
AMCG00016804 mRNA upstream 54095 31113727 ~ 31129595 (+) True AMCG00016804
AMCG00016803 mRNA upstream 71782 31107429 ~ 31111908 (+) True AMCG00016803
AMCG00016805 mRNA upstream 80077 31072994 ~ 31103613 (+) True AMCG00016805
AMCG00016799 mRNA upstream 181869 30984473 ~ 31001821 (+) True AMCG00016799
AMCG00016810 mRNA downstream 113219 31344014 ~ 31351176 (+) True AMCG00016810
AMCG00016809 mRNA downstream 133040 31363835 ~ 31370349 (+) True AMCG00016809
AMCG00016814 mRNA downstream 162376 31393171 ~ 31412053 (+) True AMCG00016814
AMCG00016813 mRNA downstream 187186 31417981 ~ 31420976 (+) True AMCG00016813
AMCG00016819 mRNA downstream 216324 31447119 ~ 31467459 (+) True AMCG00016819
TU19688 other upstream 122545 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 946849 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1070406 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1100162 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1108794 30072938 ~ 30074896 (+) False AMCG00016772
TU19913 other downstream 491144 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 497761 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1268261 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1268781 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 1270001 32500796 ~ 32503256 (+) False AMCG00016854

Expression Profile