RNA id: AMCG00016816


Basic Information

Item Value
RNA id AMCG00016816
length 729
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00016816
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31400817 ~ 31403944 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATTGACGCAGGCGCAGGCAAAGTGTATGGCTTGCAGTTCAAcaacaagattttaaaatacaatggcaGATGCTGGTCCTCGGTGGAAGGCCGGCTCAAACACATCACTGTCGGACCGGGGGGAGTCTGGGGTGTTGACGCGACCAACAGGATCTATCAGCTGGTGAATAAAAAATGGGTCACAGTGAAAGGACATCTGCAGCAAATAGATGCTGGCGGTACTGATTTTGTCACAGGGGCCAACGTCTGCTCTAACGTCTTCTGCATGAACACCAAGAGGGGTTCAACTAAGCAAAAGATGCACAAACTTCCTTGGACGAAAATCCCTGGGAAAATGAAATACTACTCCTGTGGGCCGCACTCCTGCTGGGGGGTGAACAAAGACAGCAATGTCTTCATACGGACAGGGGTCAgtgaaaacaactgtggtgggaGTGGCGATCTGTTCACTGTGAGCGGAGAAATGATGAAAGTGGAGGTGGGCACGGATGGCACTGTTTTTGGGCTGAGCACCACTGGCACAGTCTACCAAAGGCATGGTACGAGCCCCAGCAACCCCAAAGGTGATTACTGGATTCGTCTGCATGCAGTGGAGGCCATGAGGAGCCTGTCTTATGACCAGGGTATTCTATGGCTGGTGAGCCAGAATGGCCACGTCAGGCGCTGTACTAAAGGAAGCTTAAGTTTTAGCTTTCCGGGATCCCTCAGTGGAAGAGGAGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19783 lncRNA downstream 17087 31380547 ~ 31383730 (-) False AMCG00016815
TU19778 lncRNA downstream 21368 31370080 ~ 31379449 (-) True G15927
TU19730 lncRNA downstream 224215 31172185 ~ 31176602 (-) True G15890
TU19697 lncRNA downstream 294025 31103379 ~ 31106792 (-) True G15864
TU19687 lncRNA downstream 367497 31033070 ~ 31033320 (-) True G15854
TU19800 lncRNA upstream 16800 31420744 ~ 31421968 (-) True G15947
TU19815 lncRNA upstream 72899 31476843 ~ 31481401 (-) True G15962
TU19842 lncRNA upstream 85317 31489261 ~ 31489836 (-) True G15976
TU19848 lncRNA upstream 100135 31504079 ~ 31504548 (-) True G15982
TU19851 lncRNA upstream 124106 31528050 ~ 31528621 (-) True G15985
AMCG00016815 mRNA downstream 12549 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016811 mRNA downstream 63537 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016812 mRNA downstream 85429 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016807 mRNA downstream 217516 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016802 mRNA downstream 340131 31060351 ~ 31060686 (-) True AMCG00016802
AMCG00016823 mRNA upstream 239912 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016824 mRNA upstream 254304 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016831 mRNA upstream 351591 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016833 mRNA upstream 373468 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016835 mRNA upstream 399093 31803037 ~ 31818127 (-) True AMCG00016835
TU19613 other downstream 871317 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1198466 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2615310 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 3972166 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 3996895 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 1019114 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 1093563 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 1093563 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1772132 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 2022544 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile