RNA id: AMCG00016819


Basic Information

Item Value
RNA id AMCG00016819
length 1701
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00016819
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31447119 ~ 31467459 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGCGTCCGTAGTCGTCATTTTGGATGTGGTTTCCTTTAAACTGGTGCAAGAGCTCACACGATCCCGGACAGGATCACCTCACTGTGCATTCTGCGCCTTATCTGTTTCCCTGTATGATGTGGGCTGCCTGCTGATTTTCACGCTGTGCGTACGGACCACGGGAGCTGGAGTGTCAGCCCCAGGGGAGTCTGCTTCCACAGACCTGCAGTGCTGTGGGCAGGGGCCCTTTCAGGCTTCTGTAGTCATCTCTGAAGAGGACAGCCGTAGGACGCAGGCCCCGCCGTCCTACTACCACACTGCCAACCAGGAGTTGGATCTGTCCACCAAGCTGTTCAAGCGGGAGGGTGGCGGAAAACCCTACTCAGTCCTGGTGGACAACAAGATGAGCAAGAGCCACTTGTCAGATCGCAGCGGGGAGCAGATCCAGGCACAGCAGCAGCCATACTACCGGGAGAGTGGGAAAAGTGGGCAGGAGGCAGCAGGCCAGCCAGCGACAGGAGATGGGGAGGGTTCTGAggagacagaggaggaggatgaggaagaagaggaggaagaagaagaagaagaagaagaggaggaggaggatgaggaggaggatgagacGGAAGACTCCTTCAAACGGGAGCAGATAATTGTGGAGGTGAACCTCAACAACCAGACGCTGAACGTCTCCAAGGGTGATAAGGGGGCGGCCTCGCAGTCAAAGAATGCCACTCCTGTCATCAAGTCCAGTAgcgaagaggaagaagaagaagaagaggaggaggaggaggaagaagaagaggaagccATCGAGAGCCCCGAAGAagagcaggaagaggaggaggaggatgaggaggagatTGAGAGGCGGAAGGAGAAAGCCAAGAGATCCAGGAGGCCTGTTGCCGCTGCCACACAGCCTCCGCGCAAGACCAGGAAGGCGGCCATGGTGGCTGCTAGTGCTGTCACCTCCTGCGTGACCACCAGGGGCCGGCGGAAGAGTGCCGAGCCACCCAAGAGGAAGCGCAGGGCACCGCGAGAACCCAAGAGCTCCCCCAGTGGCGGTGGTCCCACCCACTCGGCCACTTCCTCCCCGTCCCCAGCATCCACGGTACCTGCCTCCTCGCAGAAAGGCAAGGGGGGCGGGGAGGAGAAGGAAACGCTAACCTGCGAGAAGTGTCCCCGTGTCTTCAACACCCGCTGGTACCTGGAAAAGCACATGAACGTCACCCACCGCCGCATGCAGATCTGCGATAAGTGCGGAAAGAAGTTCGTGCTGGAGAGTGAGCTGGCGCTGCACCAGCAGACAGACTGCGAGAAGAATATCCAGTGCGTGTCCTGTAACAAGTCCTTCAAGAAGCTGTGGTCGTTGCACGAGCACATCAAGATTGTCCATGGCTACGCGGAGAAGAAGTTTGCCTGTGAGATCTGCGAGAAGAAGTTTTACACCATGGCCCATGTCCGAAAGCACATGGTCGCTCACACCAAGGACATGCCTTTCACCTGTGAGACGTGCGGGAAGTCCTTCAAGCGCAGCATGTCCCTGAAGGTGCACTCGCTGCAGCATTCGGGAGAGAAGCCCTTCAGGTGTGAGGTAGGTCCACAGCAGGGGCGGGGGCTGTCCACCAGGGGAACTAACTACCACTGCCCCGGATTGGGAATAACTTACTTTTACCTGCAAGTGGAGCTCTTGGGACTCGTACTTGTTGTATAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19686 lncRNA upstream 413798 31033069 ~ 31033321 (+) True G15853
TU19680 lncRNA upstream 440113 31005897 ~ 31007006 (+) True G15847
TU19650 lncRNA upstream 540280 30905610 ~ 30906839 (+) True G15817
TU19550 lncRNA upstream 1015325 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 1231409 30213172 ~ 30215710 (+) True G15651
TU19814 lncRNA downstream 7848 31475307 ~ 31476218 (+) True G15961
TU19813 lncRNA downstream 12205 31479664 ~ 31481356 (+) True AMCG00016820
TU19822 lncRNA downstream 36620 31504079 ~ 31504552 (+) True G15966
TU19869 lncRNA downstream 147761 31615220 ~ 31644515 (+) True G15995
TU19924 lncRNA downstream 287583 31755042 ~ 31755427 (+) True G16037
AMCG00016813 mRNA upstream 26143 31417981 ~ 31420976 (+) True AMCG00016813
AMCG00016814 mRNA upstream 35066 31393171 ~ 31412053 (+) True AMCG00016814
AMCG00016809 mRNA upstream 76770 31363835 ~ 31370349 (+) True AMCG00016809
AMCG00016810 mRNA upstream 95943 31344014 ~ 31351176 (+) True AMCG00016810
AMCG00016808 mRNA upstream 216324 31183690 ~ 31230795 (+) True AMCG00016808
AMCG00016820 mRNA downstream 6247 31473706 ~ 31493104 (+) False AMCG00016820
AMCG00016817 mRNA downstream 25793 31493252 ~ 31503016 (+) True AMCG00016817
AMCG00016818 mRNA downstream 40092 31507551 ~ 31523662 (+) True AMCG00016818
AMCG00016826 mRNA downstream 99443 31566902 ~ 31569427 (+) True AMCG00016826
AMCG00016822 mRNA downstream 112683 31580142 ~ 31591537 (+) True AMCG00016822
TU19688 other upstream 385974 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1210278 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1333835 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1363591 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1372223 30072938 ~ 30074896 (+) False AMCG00016772
TU19913 other downstream 254480 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 261097 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1031597 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1032117 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 1033337 32500796 ~ 32503256 (+) False AMCG00016854

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049722 False 2403 mRNA 0.54 6 NC_007114.7 15773991 ~ 15795396 (+)