RNA id: AMCG00016820



Basic Information


Item Value
RNA id AMCG00016820
length 507
RNA type mRNA
GC content 0.61
exon number 5
gene id AMCG00016820
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31473706 ~ 31493104 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCCTGcccctcacctcctcctctgCCCCGGCACCGCCTCCCCCTACCGCCTCGTCCCCGTCGCCCGCCAGCCCCCCCACCGCCGCGCCCATGGGACTCAGTCCCGTCAGCTCGCTGCCCCCCCGGCCCCTGGGCCACCCCTTCTCCCACCTCCACCTGCACtcgcaccaccaccaccaccaccccccccaccaccacctccccGTCGACGACAGGACCAGTGTGGGGGGAATGGGGAAATCTCTGAATGAATTCCTTGCCTTCTCCTGTGTTTTCAGTAATTGTCAGCTGATCAGGCTGCTCCCAGAAGATTGTGGGCTAAGAAGCTATAGACTGCAAAGTGGGGCTCCAGACACCAATAGATATCACGGCATAGGAGCCATAAACAAGATAGTTCGCTCCAAGGTCTCGGCAATCATCCGATGCAAGGCTGTTGTCTTTGTCATCTTCCGGACGGGAACATTCAGTCTCTGGTTCTTCGCGGTCAGGATCGCCGCACAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19686 lncRNA upstream 440385 31033069 ~ 31033321 (+) True G15853
TU19680 lncRNA upstream 466700 31005897 ~ 31007006 (+) True G15847
TU19650 lncRNA upstream 566867 30905610 ~ 30906839 (+) True G15817
TU19550 lncRNA upstream 1041912 30429053 ~ 30431794 (+) True G15730
TU19445 lncRNA upstream 1257996 30213172 ~ 30215710 (+) True G15651
TU19822 lncRNA downstream 10975 31504079 ~ 31504552 (+) True G15966
TU19869 lncRNA downstream 122116 31615220 ~ 31644515 (+) True G15995
TU19924 lncRNA downstream 261938 31755042 ~ 31755427 (+) True G16037
TU20089 lncRNA downstream 758710 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 768607 32261711 ~ 32262672 (+) True G16169
AMCG00016819 mRNA upstream 6247 31447119 ~ 31467459 (+) True AMCG00016819
AMCG00016813 mRNA upstream 52730 31417981 ~ 31420976 (+) True AMCG00016813
AMCG00016814 mRNA upstream 61653 31393171 ~ 31412053 (+) True AMCG00016814
AMCG00016809 mRNA upstream 103357 31363835 ~ 31370349 (+) True AMCG00016809
AMCG00016810 mRNA upstream 122530 31344014 ~ 31351176 (+) True AMCG00016810
AMCG00016817 mRNA downstream 148 31493252 ~ 31503016 (+) True AMCG00016817
AMCG00016818 mRNA downstream 14447 31507551 ~ 31523662 (+) True AMCG00016818
AMCG00016826 mRNA downstream 73798 31566902 ~ 31569427 (+) True AMCG00016826
AMCG00016822 mRNA downstream 87038 31580142 ~ 31591537 (+) True AMCG00016822
AMCG00016821 mRNA downstream 118513 31611617 ~ 31634762 (+) True AMCG00016821
TU19688 other upstream 412561 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1236865 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1360422 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1390178 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1398810 30072938 ~ 30074896 (+) False AMCG00016772
TU19913 other downstream 228835 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 235452 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1005952 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1006472 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 1007692 32500796 ~ 32503256 (+) False AMCG00016854

Expression Profile