RNA id: TU19813


Basic Information

Item Value
RNA id TU19813
length 1693
lncRNA type sense_over
GC content 0.36
exon number 1
gene id AMCG00016820
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31473706 ~ 31493104 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTAATAGCTGTTTTTATGTTAGAATGTGGGAGTGATTGCTAGCCTGACAAATAGTGCATGTTATGGGCAGCTGGAAAACACGACTCCGACTCAGTGGCAGAGGGGTGGGCTTTGAATTACGGTGGGAGTGGTGTCCAAATTGCTGCCCTTGGTTAATAGATGCCAGGTATACAGGAAAGCCACATCAGATATCTGACAAATGGAGAATACTCTGTACTGGTTTATGCTTAAACCCACTCTAAAACTACAGGTGGTCGGACCTCTAAGGAAAAGATCATTTTTGCAGACTGTTTCAACTCACCACTTTAGCAGGCCTGTTTTGCTCTAACTATgccagaaaaaactaaatcccaCCCCTTGGGCTCAAGTCACTCTTGCcttgttattgatttcttatttttctttttttttgatGGAGCAAGAAGGTTATAACTGGTTGGAGGCAATGAGGTTGTTTTGCTATTCCTAATCTTGACCCCTTTAGACACAGTGCTGGTGCCACATACTTTTTTACCAGGTCTGCGTGGATTGTTATAGACTAAGCCAGTCCTTCACGGTTTCAAATACTGTCTGCGACCTACTTGAAACAATCAGTGTGTGGGTCAGAAAGGCAACTGACAGGATCAAATccagtatttgtattgtttgtgtatgtgttttttatatataaaatatatacagtaccaTTTACACTAAATTATTTCTCACAGAAAAAAGTGACATAGTTTTATTAGGAAAagcctttattttaaagaatacaagTACAGAATTCATGGGTGTACTAGGAAACAGGGCTGATTTACTCTCTTGAAGTTGTTCTTCCGTATGTTTTTATATCATGCCCcatgtttgtatgcatttttaaagctgGCCGGGTTTCCATTCTGGTCGCACTGCAGAACTGCTGACAGGGCAGGCTTTAAAGTGGAGTGTTGCCGAAATGTAATCGGTTATcactgtctgtttgtgtgccaCTACAGATGTTTTCTACTGCTTTTTAATTGCCAGTTGTCTGTAAGGGAGGGTTTTTGCTGCTGGACTACCACCCAACTCTTCCATGGCAGGACAAATCGCTGCTAACCTCATCCAAGCTCCAGCCATGTTTCCTGTGTCttcgtgcgtgtgtgtgtgcaagattGTCACTGATGCATTCCAATGGTTGTGGAACGTTGGTTTCCTTTGCTGAAGTCATTGTGTGAATTAGaagacctgtttttttttggtttttttgggcgggggggcaggttggttcagttttttttttttttttttttttttttttccctaggAAAAATCTCAAGCTGTGGAATAGAACTGTCAATTCTCTCTCTCGAACTGCTTGATTTAACAAGATGGCTGCTTAGCACAAAGTGTCAATCCAGATACAGAAAAGGGGTCAGGTCAAAACTGACAGGGCAGCCCCCGACATGTGCAGGAGATTGTGCTGCTCTTGTGTTTCTTCCACTTGGAGATTAACTTCGGCCAGACATTCTGTATGGAACAGTAAGCTGTGTGTTCTAGTTGTCTCAATTAATTGATCAGGATTGTATAGGTCAGGAGCTAAAGCGGTTGAATGTTGACCAGCTATTTCTGTGATATTTCTGTGTAAGTCGAAATGGTTCCCAGTTAccttcacatcattttcacattCTTGTAGCCAGGAAGATTGTGGGCTAAGGtgggtttgttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19814 lncRNA upstream 3446 31475307 ~ 31476218 (+) True G15961
TU19686 lncRNA upstream 446343 31033069 ~ 31033321 (+) True G15853
TU19680 lncRNA upstream 472658 31005897 ~ 31007006 (+) True G15847
TU19650 lncRNA upstream 572825 30905610 ~ 30906839 (+) True G15817
TU19550 lncRNA upstream 1047870 30429053 ~ 30431794 (+) True G15730
TU19822 lncRNA downstream 22723 31504079 ~ 31504552 (+) True G15966
TU19869 lncRNA downstream 133864 31615220 ~ 31644515 (+) True G15995
TU19924 lncRNA downstream 273686 31755042 ~ 31755427 (+) True G16037
TU20089 lncRNA downstream 770458 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 780355 32261711 ~ 32262672 (+) True G16169
AMCG00016819 mRNA upstream 12205 31447119 ~ 31467459 (+) True AMCG00016819
AMCG00016813 mRNA upstream 58688 31417981 ~ 31420976 (+) True AMCG00016813
AMCG00016814 mRNA upstream 67611 31393171 ~ 31412053 (+) True AMCG00016814
AMCG00016809 mRNA upstream 109315 31363835 ~ 31370349 (+) True AMCG00016809
AMCG00016810 mRNA upstream 128488 31344014 ~ 31351176 (+) True AMCG00016810
AMCG00016817 mRNA downstream 11896 31493252 ~ 31503016 (+) True AMCG00016817
AMCG00016818 mRNA downstream 26195 31507551 ~ 31523662 (+) True AMCG00016818
AMCG00016826 mRNA downstream 85546 31566902 ~ 31569427 (+) True AMCG00016826
AMCG00016822 mRNA downstream 98786 31580142 ~ 31591537 (+) True AMCG00016822
AMCG00016821 mRNA downstream 130261 31611617 ~ 31634762 (+) True AMCG00016821
TU19688 other upstream 418519 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1242823 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1366380 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1396136 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1404768 30072938 ~ 30074896 (+) False AMCG00016772
TU19913 other downstream 240583 31721939 ~ 31727017 (+) True AMCG00016829
TU19916 other downstream 247200 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 1017700 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 1018220 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 1019440 32500796 ~ 32503256 (+) False AMCG00016854

Expression Profile