RNA id: AMCG00016823


Basic Information

Item Value
RNA id AMCG00016823
length 1565
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00016823
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31643856 ~ 31653933 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGGAGACTACGGTTCCCAGCATGCAACGCGGCTCCCGTCCAATAGCAATGACACGTACTGTGGGGGCTGGTGCGTCGCTCAGTTCCTGGTTAAAGATGGCGGATGAGAATGAGACAGCACCGAAGCCGGAGAAAGAAGAAGAGGTAGAAGAAGACCATGGACATTGCAGCGACTGTGAGAATGAGGAGCATCACTGCAGCGACGGAGAGAGAAGCCCAGGGGATGACGGCGGagcaaagaaaaagaagaagaaacagaagaagaaaaaggacaaAGTCGGAGGGAAGGAGTTGGGGCAGGAACAGTCAGCTAAGGTGAACTCTCTGCCTGCAGACAAGCTGCAGGAGATCCAGAAGGCCATCGAGCTGTTCTCTGTGGGCCAGGGCCCAGCCAAAACCATGGAGGAGGCTACCCGGCGCAGCTACCAGTTCTGGGACACCCAGCCTGTTCCCAAACTGGGGGAGGTGGTGATGTCGCATGGCTCCATCGAGCCCGACAAGGACAACATCCGCATCGAGCCCTACAGCCTTCCCCAGGGCTTCACCTGGGATGCTCTGGACCTGGGCAACCCTGCCGTGCTGAAGGAGCTCTACACTCTGCTGAATGAGAACTATGTGGAGGATGATGACAACATGTTCAGATTTGATTACTCCCCCGAGTTCCTCCTCTGGGCCCTCAGACCCCCAGGCTGGCTGCCCCAGTGGCACTGCGGAGTACGGGTGGTCTCCAATAAGAAGCTGGTTGGCTTCATCAGTGCTATCCCGGCCAATATCCGCATCTATGACACagAGAAGAAAATGGTGGAGATTAACTTCCTCTGTGTGCACAAGAAGCTGCGCTCCAAGCGAGTGGCTCCGGTTCTGATCCGGGAGATCACCAGACGGGTCAACCTACAGGGCATCTTCCAGGCTGTCTACACTGCTGGCGTGGTGCTGCCCAAACCTGTGGGCACTTGCCGGTATTGGCACAGGTCTCTGAACCCACGGAAGCTGATCGAGGTGAAGTTCTCCCACCTGAGCCGCAACATGACTATGCAACGCACTATGAAGCTCTACCGCCTGTCTGAGGCTCCTAAGACGGCGGGTCTGCGGACCATGCAGAAGAAGGACGTGCCGGTGGTCCAGCAGCTGCTCCTGGACTACCTAAGGCAGTTCCACCTGACGCCGGTGATGAGtgaggaggaggtggagcaCTGGCTACTGCCCAGGGAGAACATCATCGACACATACGTGGTGGAGACTCCAGAGGGCGTGGTGACGGACTTCCTGAGCTTCTACACGCTGCCGTCCACCATCATGAACCACCCGGTGCACCGCAGCCTGAAGGCGGCCTACTCCTTCTATAACGTGCACACCACCACCCCCCTGCTGGATCTCATGAGCGACGCTCTCATCCTGGCCAAATCGAAAGGGTTTGATGTCTTCAATGCACTGGACCTGATGGAGAACAAGACCTTCCTGGAGAAGCTCAAGTTTGGGATCGGAGACGGCAACCTGCAGTATTACCTGTACAATTGGAAGTGTCCCAGCATGGGCTCAGAAAAGGTTGGCCTGGTGCTGCAG

Function

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG:

id description
K00671 NMT; glycylpeptide N-tetradecanoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19880 lncRNA downstream 28643 31604606 ~ 31615213 (-) True G16004
TU19851 lncRNA downstream 115235 31528050 ~ 31528621 (-) True G15985
TU19848 lncRNA downstream 139308 31504079 ~ 31504548 (-) True G15982
TU19842 lncRNA downstream 154020 31489261 ~ 31489836 (-) True G15976
TU19815 lncRNA downstream 162455 31476843 ~ 31481401 (-) True G15962
TU19907 lncRNA upstream 39883 31693816 ~ 31697608 (-) True G16024
TU19910 lncRNA upstream 45203 31699136 ~ 31699400 (-) True G16026
TU19936 lncRNA upstream 64967 31718900 ~ 31720036 (-) True G16043
TU19968 lncRNA upstream 115797 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA upstream 116742 31770675 ~ 31771274 (-) True G16069
AMCG00016816 mRNA downstream 239912 31400817 ~ 31403944 (-) True AMCG00016816
AMCG00016815 mRNA downstream 255588 31380646 ~ 31388268 (-) True AMCG00016815
AMCG00016811 mRNA downstream 306576 31336445 ~ 31337280 (-) True AMCG00016811
AMCG00016812 mRNA downstream 328468 31292282 ~ 31315388 (-) True AMCG00016812
AMCG00016807 mRNA downstream 460555 31177556 ~ 31183301 (-) True AMCG00016807
AMCG00016824 mRNA upstream 4315 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016831 mRNA upstream 101602 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016833 mRNA upstream 123479 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016835 mRNA upstream 149104 31803037 ~ 31818127 (-) True AMCG00016835
AMCG00016834 mRNA upstream 185898 31839831 ~ 31844052 (-) True AMCG00016834
TU19613 other downstream 1114356 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1441505 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 2858349 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4215205 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4239934 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 769125 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 843574 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 843574 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1522143 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1772555 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile