RNA id: AMCG00016829



Basic Information


Item Value
RNA id AMCG00016829
length 873
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00016829
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31701669 ~ 31731446 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAAGGCCTGACACACAAAGCCGCACTGTCGTTTGGTCCCAGGAGAGCAGCTGAGGCGGATTTCAGACTCCAGCTCCCCCGTGTGGCGCAGACGACGCACCGGCGCCGGATTGTGCTGAGCATAGGCTCGCTGATGGCCAAGCTGCTAGTGAACGCTGAGTTTATAAAGCATCTACTTTATAAAGAAGGTTGTGGCAAGAGAGAGACACTTTATATAAGGGCCAGGAGCCACAGCACCCTGCCACTTTGTCAGATGTCAGACTCTCAGCACTCAGCCCCCGACATGGAGATGACAGCCATTCCTGATGCCATTCAGAGGCCACCGATTTATAGACACACAGATAATCTACCTCCCACGCAGCCACAGGAGGATCTGACCAAGAAAGCTTTCGACTTCCCAGAAGAATCTGACAACATTCAACATTACCACCAGAGACATGACACGTCTCACTGCAACGACCATTCAACTCGGGCACAGTCTCTCTTCTCTTTTGCAACTCTGGCTAAGGACAATGCACTTCTCCTGTTTAAAACTAAACCTGTCAAATACTCAGTTTCTGTAAacaatatagatatacatttctCAGTAGAGGATACGAGACCGGTATCAGGATGGACTCAAGTGTGTGCCACCTGGGAGTCAAGTAGTGGAAACGTTACGATATGGGTGAATGGGAAATCTAGTAGCAACCAAATGAAAACTGGGCAGGTGATTCCTCTAATGAATCATTCCATTGTCCTAGGTCAGGACCAGGACAGTTTTGGTGGGTTTTTTAACGAGTGGAACAGATCACAGAAGTCCACATGTGGGATTATGTGCTTTCAGGCTCAACCTTGGCAGGAGACCAAACTGAAAGCACCAGAGTTCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19869 lncRNA upstream 57154 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 197117 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 220313 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 225451 31475307 ~ 31476218 (+) True G15961
TU19686 lncRNA upstream 668348 31033069 ~ 31033321 (+) True G15853
TU19924 lncRNA downstream 23596 31755042 ~ 31755427 (+) True G16037
TU20089 lncRNA downstream 520368 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 530265 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 706808 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 1126105 32857551 ~ 32859016 (+) True G16290
AMCG00016832 mRNA upstream 43 31700472 ~ 31701626 (+) True AMCG00016832
AMCG00016828 mRNA upstream 6918 31687002 ~ 31694751 (+) True AMCG00016828
AMCG00016825 mRNA upstream 64624 31635059 ~ 31637045 (+) True AMCG00016825
AMCG00016821 mRNA upstream 66907 31611617 ~ 31634762 (+) True AMCG00016821
AMCG00016822 mRNA upstream 110132 31580142 ~ 31591537 (+) True AMCG00016822
AMCG00016830 mRNA downstream 2514 31733960 ~ 31751113 (+) True AMCG00016830
AMCG00016827 mRNA downstream 39480 31770926 ~ 31777458 (+) True AMCG00016827
AMCG00016836 mRNA downstream 293726 32025172 ~ 32034991 (+) True AMCG00016836
AMCG00016845 mRNA downstream 343305 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016844 mRNA downstream 358588 32090034 ~ 32139763 (+) True AMCG00016844
TU19688 other upstream 640524 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1464828 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1588385 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1618141 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1626773 30072938 ~ 30074896 (+) False AMCG00016772
TU20166 other downstream 767610 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 768130 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 769350 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 1124915 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1937183 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile