RNA id: TU19913



Basic Information


Item Value
RNA id TU19913
length 972
RNA type TUCP
GC content 0.59
exon number 5
gene id AMCG00016829
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31701669 ~ 31731446 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGGAACAATAGGGGGGTTTATTCCTAGTGTAGTGCAGCTCAATTCCAGCTCAATTTCAGTTCAATTTCTCTGACTTCTGAATTCAACACGACTTACATGGACTACTTCCCAGTTCCATCAATTACACTTTATATAAGGGCCAGGAGCCACAGCACCCTGCCACTTTGTCAGATGTCAGACTCTCAGCACTCAGCCCCCGACATGGAGATGACAGCCATTCCTGATGCCATTCAGAGGCCACCGATTTATAGACACACAGATAATCTACCTCCCACGCAGCCACAGGAGGCTCCTGTGAAGAGCACCAACAGTACATTAAGTTACTATCGACTTGCTGTGCTGCTTCTTACCATCCTGTGCTGCCTACTCTTGGGTGCCACTATAGTGCTGGGAGTTCTGTaTAATTTAGAATGCAATTGAAAAAGATGCCTTTTCTAATTCTCTGTTGGAGGAGAAACATCTGACCAAGAAAGCTTTCGACTTCCCAGAAGAATCTGACAACATTCAACATTACCACCAGAGACATGACACGTCTCACTGCAACGACCGTCTGCCTGAGATTCAACTCGGGCACAGTCTCTCTTCTCTTTTGCAACTCTGGCTAAGGACAATGCACTTCTCCTGTTTAAAACTAAACCTGTCAAATACTCAGTTTCTGTAAacaatatagatatacatttctCAGTAGAGGATACGAGACCGGTATCAGGATGGACTCAAGTGTGTGCCACCTGGGAGTCAAGTAGTGGAAACGTTACGATATGGGTGAATGGGAAATCTAGTAGCAACCAAATGAAAACTGGGCAGGTGATTCCTCTAATGAATCATTCCATTGTCCTAGGTCAGGACCAGGACAGTTTTGGTGGGTTTTTTAACGAGTGGAACAGATCACAGAAGTCCACATGTGGGATTATGTGCTTTCAGGCTGTGAGATAACTGCTCTGAATGCAGGGTTGTCTGTCACCACGNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19869 lncRNA upstream 77424 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 217387 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 240583 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 245721 31475307 ~ 31476218 (+) True G15961
TU19686 lncRNA upstream 688618 31033069 ~ 31033321 (+) True G15853
TU19924 lncRNA downstream 28025 31755042 ~ 31755427 (+) True G16037
TU20089 lncRNA downstream 524797 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 534694 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 711237 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 1130534 32857551 ~ 32859016 (+) True G16290
AMCG00016832 mRNA upstream 20313 31700472 ~ 31701626 (+) True AMCG00016832
AMCG00016828 mRNA upstream 27188 31687002 ~ 31694751 (+) True AMCG00016828
AMCG00016825 mRNA upstream 84894 31635059 ~ 31637045 (+) True AMCG00016825
AMCG00016821 mRNA upstream 87177 31611617 ~ 31634762 (+) True AMCG00016821
AMCG00016822 mRNA upstream 130402 31580142 ~ 31591537 (+) True AMCG00016822
AMCG00016830 mRNA downstream 6943 31733960 ~ 31751113 (+) True AMCG00016830
AMCG00016827 mRNA downstream 43909 31770926 ~ 31777458 (+) True AMCG00016827
AMCG00016836 mRNA downstream 298155 32025172 ~ 32034991 (+) True AMCG00016836
AMCG00016845 mRNA downstream 347734 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016844 mRNA downstream 363017 32090034 ~ 32139763 (+) True AMCG00016844
TU19688 other upstream 660794 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1485098 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1608655 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1638411 30081254 ~ 30083528 (+) False AMCG00016772
TU19419 other upstream 1647043 30072938 ~ 30074896 (+) False AMCG00016772
TU19916 other downstream 1539 31728556 ~ 31734316 (+) False AMCG00016830
TU20166 other downstream 772039 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 772559 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 773779 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 1129344 32856361 ~ 32857440 (+) True G16289

Expression Profile