RNA id: TU19916



Basic Information


Item Value
RNA id TU19916
length 526
RNA type TUCP
GC content 0.39
exon number 3
gene id AMCG00016830
representative False

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31728556 ~ 31751113 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTCTTTATAAAGTGGGTGTTTTATAAACTCCGAGTTCACAGACAACTCAAGTCATCCTGCATACCAATAATGGAGCTACAGAACACATACAGTGTACCGCAGAGAAccacagaaaatatatacacaacttTACACCAATCCACAGATGGATTCCAGTCTGATTTGATTAGTAAAGTGCAGAAGGAAAAACAGGACTCAATATCATCCACATTCCTCTGTTCTAAAGATCTGACCAAGAGAGCTTTCTACTTCCCCGAAGAATCTGACAACATTTACGTGAGAGTAACTCCAAAGACACTGTCACGTCTCACTGCAACAACAGTCTGCCTGAGATACAACTCTAATCTGACTCGGGCACAGTCTCTCTTCTCTTTTGCAACTCTGGCTAAGGACAATGCACTTCTCCTGTTTAAAACTAAACCTGGCAAATACTCATTTACCGTAAACAATATAGAAACAAATTTGTCAGAAGAGGATACTAGACCAGCATCAGGATGGACTCAAGTGTGTGCCACCTGGGAGTCN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19869 lncRNA upstream 84041 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 224004 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 247200 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 252338 31475307 ~ 31476218 (+) True G15961
TU19686 lncRNA upstream 695235 31033069 ~ 31033321 (+) True G15853
TU19924 lncRNA downstream 20726 31755042 ~ 31755427 (+) True G16037
TU20089 lncRNA downstream 517498 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 527395 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 703938 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 1123235 32857551 ~ 32859016 (+) True G16290
AMCG00016832 mRNA upstream 26930 31700472 ~ 31701626 (+) True AMCG00016832
AMCG00016828 mRNA upstream 33805 31687002 ~ 31694751 (+) True AMCG00016828
AMCG00016825 mRNA upstream 91511 31635059 ~ 31637045 (+) True AMCG00016825
AMCG00016821 mRNA upstream 93794 31611617 ~ 31634762 (+) True AMCG00016821
AMCG00016822 mRNA upstream 137019 31580142 ~ 31591537 (+) True AMCG00016822
AMCG00016827 mRNA downstream 36610 31770926 ~ 31777458 (+) True AMCG00016827
AMCG00016836 mRNA downstream 290856 32025172 ~ 32034991 (+) True AMCG00016836
AMCG00016845 mRNA downstream 340435 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016844 mRNA downstream 355718 32090034 ~ 32139763 (+) True AMCG00016844
AMCG00016842 mRNA downstream 437556 32171872 ~ 32196229 (+) True AMCG00016842
TU19913 other upstream 1539 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 667411 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1491715 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 1615272 30109599 ~ 30113284 (+) True AMCG00016770
TU19422 other upstream 1645028 30081254 ~ 30083528 (+) False AMCG00016772
TU20166 other downstream 764740 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 765260 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 766480 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 1122045 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1934313 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile