RNA id: AMCG00016834


Basic Information

Item Value
RNA id AMCG00016834
length 858
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00016834
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31839831 ~ 31844052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTATCTGCATAACTGCATCGCTCGGGGTTGGGTGAACGGTATCTTATCCTTAAACCAGCCCGGCATGGAGTCAGCTGGCCGCGTTGCTTCTGATTATGAAGTCCTGGTGGAAGTGGGGCAGGGCGCGTACGGCACGGTGTTCAAAGCCAGGGAGACCAAGGGGCAGCAGAGGCTGGTGGCCGTCAAGAAACTCAACGTGATCGGGGACGTGGGCACTGGGATCCCTGCGTCCATGATAAGAGAGGTGTCCGTGCTGAGGAAAATTGAGTGTTTCAACCACCCCAACATAGTCAGGTTGCTTGATGTTTCGGCCACACTGTGGAATAATGCCCTGGATTTGACTTTAGTGTTTGAGTACATTGACCAGGACCTATCAACGTATCTGTCGGCAGTGCCAAAGTCTGGTCTGCCTATTGACACCATCAAGGACCTGATGCGGCAGCTTCTGAGTGGACTGGACTTTCTCCACACCAACACTGTGGTGCACCGGGACCTGAAGCCAGAAAATATGCTGATCAGCTGCAGGGGACAGGTGAAGATTGCTGATTTTGGTCTGGCCCGGCTCTACAGCTTCCACATGGCTCTCACACCAGGCATCGTCACCCTGTGGTACAGAGCTCCAGAGGTCCTGCTGTACTCCAGCTATCTGCCCTCGGTGGACATGTGGAGTGCTGGCTGTATTTTTGCCGAGCTGTTCCTCCTTCGGGTGATTGGCCTGCCCATGGAGGAAGAATGGCCCGAGCTGAGCCCTCTTCCATACTCCTCATTTTGGGAAACCAAATCTCCATCAAACCAGCTGATTCCGAACATGGACGAGCAAGGCAGGGACCTGTTATTTGACAAGCTCAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19968 lncRNA downstream 68557 31769730 ~ 31771274 (-) False G16069
TU19969 lncRNA downstream 68557 31770675 ~ 31771274 (-) True G16069
TU19936 lncRNA downstream 119795 31718900 ~ 31720036 (-) True G16043
TU19910 lncRNA downstream 140431 31699136 ~ 31699400 (-) True G16026
TU19907 lncRNA downstream 142223 31693816 ~ 31697608 (-) True G16024
TU20077 lncRNA upstream 361671 32205723 ~ 32206877 (-) True G16154
TU20076 lncRNA upstream 362910 32206962 ~ 32208117 (-) True G16153
TU20119 lncRNA upstream 417497 32261549 ~ 32262666 (-) True AMCG00016847
TU20181 lncRNA upstream 549090 32393142 ~ 32393380 (-) True G16244
TU20182 lncRNA upstream 572139 32416191 ~ 32416444 (-) True G16245
AMCG00016835 mRNA downstream 21704 31803037 ~ 31818127 (-) True AMCG00016835
AMCG00016833 mRNA downstream 38579 31777412 ~ 31801252 (-) True AMCG00016833
AMCG00016831 mRNA downstream 77131 31755535 ~ 31762700 (-) True AMCG00016831
AMCG00016824 mRNA downstream 165335 31658248 ~ 31674496 (-) True AMCG00016824
AMCG00016823 mRNA downstream 185898 31643856 ~ 31653933 (-) True AMCG00016823
AMCG00016838 mRNA upstream 410 31844462 ~ 31852119 (-) True AMCG00016838
AMCG00016837 mRNA upstream 135159 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016847 mRNA upstream 417876 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016846 mRNA upstream 425911 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016849 mRNA upstream 460598 32304650 ~ 32325161 (-) True AMCG00016849
TU19613 other downstream 1310331 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 1637480 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3054324 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4411180 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4435909 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 579006 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 653455 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 653455 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 1332024 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1582436 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile