RNA id: AMCG00016840


Basic Information

Item Value
RNA id AMCG00016840
length 2364
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00016840
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32210141 ~ 32216323 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCAGGCAGAGCAACACCAGCTGATTTGTACATCGTGTGAGAGCACACTGTGGTCCTCCAAGGCTTTGAGGTTCTCCACTCCGGCCTCTTCTGCAGAGCTGTGCTCATATGTTTTGGGCTCCCACCCTctggctgctgtgctgtgtcgcCTGTCTCCCTGTTTTCCAGTGACTGGTGGATTGGATCTGGGTTGAGTGTGGTGAATGATGGCCAAGACTGTGGTGCTCATTACCGGCTGTTCCTCAGGGATCGGGCTGAGTCTGGCGGTGCGTCTGGCCTCCGACCCCTCTAAAGCCTACAAGGTCTATGCCACGATGCGTAATTTGGCCAAGAAGGAACGTCTTCTGGACTGTGTGAAGGGCTTATATCAGGACACCCTGGACATTCTCCAGCTGGATGTCACTGACCAGCAGTCCATTCTGGATGCCAAGGATAAGATAGAAGAGAAGAGGTTGGACATCTTAGTGTGCAATGCTGGGGTTGGGCTAATGGGTCCCCTGGAAGTCCTGTCCTGCGAGACCATGCAGCAGATTTTGGATGTCAATCTTTTTGGCACTGTTCGTACCATCCAGACATTCCTGCCTGGGATGAAGGCCAGGAGAACGGGCAGGATCCTGGTGACTGGCAGCATTGGTGGTCTGCAGGGTTTGCCCTTCAATGAGGTGTACTGTGCCAGTAAGTTTGCTGTGGAAGGAGTCTGTGAGAGCCTGGCCATCCTGCTACAGCACTTTGACATACACCTCAGCCTGATTGAATGCGGTCCAGTCAACAGCAATTTCGTCAGCAATCTGCAGTGCACGGACCCTGAGAGCTCGTCCATGCAGCACGTTGATGCGCAGACACGGGCTCTGTACCGGACATACCTGAGACACTGCAGCACCATCTTCCAGACCGCAGCGCAGGACAGCGAGGATATCGTGCAGGTCTTCATGGATGCTATTGGGGCTCCCTCCCCAGCTCTGCGCTATTACACAAACACCGCCCTGCAGCCCCTGACTGCTCTCAAACTGCCCTTCCACGACGGGTCCCACTACATCCGCAACATCAACAAGTTTATCTTCCCCACTGACCACACAGATGAGGCTTAAAGAGATTCCCGAGGCACGCAAATTCCGATATACCTGGCCCTGCTCATCCAGTTATATCACAGTCTTATTACATAGAAATGCAGCTATGGTCCAAATGTAATCCGTGTTTCGAAGTTTGGTGTTGTTTGGCGATTCTTCAATTATTGAAGAAATAATGAGAATGACATTAGACTTGTTTGTATAAATGAGCGTTGCAGAGTTTGCTGAACACCTGCTTAGCCTAACCTGAACTGAACTGATTGAACTGAGGCAGATTTCTAAGACAAGGTCcaaagtttgttatttttctctaggctgaatcagtgttcaacaaactcataataatcatattgaTGATAAACAAGTATAGCTGGATGATCAATGTTTTTGACTGAAAGAACCTCTAAATAACGTGGTCCCAAATGAAGGGGATGGCTAATCCTTTAGACTCAAATTGTAGAGCTTATTCCAGGGCACCAAACAGCTGTACCTTCCTATCTGTTTCTGGTCACAGAACATCTCTGCTTAGCTTGAAtggaatttgtgttttatatcttgcgttttcattatattatgtttGGACTATTGCTGGCAGTTGTAGCCCAGTGTATAAGCGTAACTGAACATTCTGTAATATTTGCACTTATTGTGTTCATTAAATTAGAATAAGAAACCCCTTCTGTATCTATATTGACGTCACAAGATCTATGCGAGTCTTTTTACAAGTTGTGAGTGTTCTCCGGTGGTTGAACAGTAATGTTGTCCACACATTTCACAGGCCCAATTCCTCTTAAATTAAGTTATAGACGGGTCAATTTCTAACATTATTTTACCACACAATCTCGCCACAATGTCATATTCTGTTATCTTCcttgtttttgctgtgtttccACAAATGTCCTTATCAATACAAGTCTAATATGTCATTGGCTTGCTTTCTTGTGTTCTAGAGGTTATATCTAATGAATATCAATTGTAAAGTTCCTGTTCTTACAGTACATTAAGTAGTCTATGTGACATCACTCTTTAGAGGCAGCTCAGACCCCACCCCCTGCACTCAACTCACTCTCTCCCGctgtaaaacaaatgcactCAGGGTTAAAACGTGATGAGGGTGtctgtttaaagtttaaactaAATGACAAATTGAATCCTGGCATAGAATCCTACAAACAACAGGACTGGATTGGAACTTTCTCCTTCCAAATCCTTGAACTTAAGAATGtgatacaacaaaaaaatgccaagtattaatatatatgttgttgttttttttattcaaacacTGCACAGTAAG

Function

GO: NA

KEGG:

id description
K00044 HSD17B1; 17beta-estradiol 17-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19924 lncRNA upstream 454714 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 565626 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 705589 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 728785 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 733923 31475307 ~ 31476218 (+) True G15961
TU20089 lncRNA downstream 35491 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 45388 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 221931 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 641228 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 765456 32981779 ~ 32982330 (+) True G16323
AMCG00016839 mRNA upstream 3267 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016842 mRNA upstream 13912 32171872 ~ 32196229 (+) True AMCG00016842
AMCG00016844 mRNA upstream 70378 32090034 ~ 32139763 (+) True AMCG00016844
AMCG00016845 mRNA upstream 125569 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016836 mRNA upstream 175150 32025172 ~ 32034991 (+) True AMCG00016836
AMCG00016843 mRNA downstream 9469 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016841 mRNA downstream 35485 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016848 mRNA downstream 68433 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016851 mRNA downstream 177558 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016852 mRNA downstream 264341 32480664 ~ 32481807 (+) True AMCG00016852
TU19916 other upstream 475825 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 483124 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1148996 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1973300 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2096857 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 282733 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 283253 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 284473 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 640038 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1452306 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile