RNA id: AMCG00016841


Basic Information

Item Value
RNA id AMCG00016841
length 2902
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00016841
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32251808 ~ 32260627 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTGATGCTTCGGACTGTTTTCCAAGATGACGGACCCCAGCGCCTCGCCGGAGGACCCCTGGATTAAAACGGACCCCTCCTTCAGTGACAATGGATTCGACCCCAGTAAGTACCCTGCTTTCCTTGctggtgtctctgtgtctctgccctCCAGACACCTCAGTCTCCATAGCTGGCACCCCTCTGTTCACACTGCACTGTCAGAGACATGGAAAGGTTATGACGATTTGCAGTCCATAGTCCCCACATGCCAGCAACAGACTGACTTCCCCATAGGATCACAGAAAATGAGCAAAGCCACCGTGCTGCAAAAAACGATTGACTACATCCAGTTTCTGcacaaggagaagaagaaacagGAAGAGGAAGTGACCACGCTGAGGAAGGAAGTGATGGCACTGAAGATAATGAAATCGAACTACGAGCAGATCGTGAAGGCCCACCAGAACAACCCCCAGCAGGGCGAGGAGCAGGTGTCCGACCGGGTGAAGTTCAGCATCTTCCAGAGCATCATGGACTCCCTCTTCCAGTCCTTCAACACCACCATCTCCGTCACCAGCTTCCAGGAGCTGTCGGCCTGCGTCTTCAGGTGGATCGAGGAGCACTGCAAGCCCCAGACTCTGCGGGAGTTCGTGGTGGGCATCCTACAGCAGCTGAACAATCGGCTATACTGACACCAAGCAGATCCTGGAGAGATCTGGACTGGCCTCTTTCCCtggccactttttttttttttaatttgtctccaAATCAGGAAACCGCTTTACTTCACCTGGTCAGTTTTCAAGCTTTCTGCTCTCCTGCACTCTACAGAGAAAACGTCCCATTCTCCCAGGCATGGCACTGTGGCTGTTCCTCACACGCCCTCTTCAGATTTCTGGCGATTTTTCAAGGCTGTCTTGGATCTgttgatggttttattttattccaatagCTTGGCTTTTGGAGCGATAGGCTGTGCACAGGGGAAGTATCGCTTCTTTATGAGATTTGTTAATGACTTCAGTATGAGTTTGTAATGACTATGAGTGAGGGCTTTTTtcagagaaggagaaaaaaaaagtaaagtggATCATTTTGTTTCAGCAATCCACAGCTCGCTCAAGCTACTGTACGATTTCTGAGAAATTCCCGACACTGAGACGTGATTGCTCAGCGAGTCAGTGGTTACTGCTAAATTTTggtggtttattatttttcattttttttctttgctgtatttttttttttttttttttacacaacgTGGGTGTCTTGGTGTTTTCAAAcctttttgtattaaaattgttGTCTTAAAACGACAGTTTTCATGCAGCACAGAAGTGTACTTCAGGCGAACTCTGGAGCACCAGACTCATGGCACACACCACCAAATTGTTTCCGGTTgcactttctttctttacattaACGTTTATTTCGACATTGCAATTTTCAAGTGTGCAAGATTTTAAATAGCATACAGGTACACATCTCACTACTACTTCCACTTTTACAACAGTACCACGGAGCATAGGCTTCATGATTCATTCTGTACTGCCCATGCCCAAGATTTACTGTGGGACTCAAAAGAGGACAATCCTATTAGGTCACTGAcaaaaaagaagggaaaaaatccATTGTCCTTCAGACATGCAGATGTCTAGAAAACAGATGAGTTTTAACTGTTGGTAGGCAGTTCATAGTGTCCAATTCTAGAGTACATTGGAAACCAACTTTACCTTTCTTGTAGTCCGTGTGTGctggttcacacacacacacacacctttccTGTCCCTCCTCTGACCTGTGAGGGCTTTAAGGCTAACAAGAATTCCAGCTTTTCAAATGATTGCAAAGCACAATGATGTATTATTCTCTTTCAGGAGAATCAACTATATAAAGCTCAGCAAGCTTTGTGGTAAATATTGCACTGAAGAGCTGGCATTTCAGTGCGTCCTGGTTTATGACCTTGATATAAAAAAAGGACTTCAACCTGAGAAAATTCTagatttattcttattataaagCACATATAGTGCTCCTGCAATTCAGCACAGCTTTTGCAGCCTGGGAAGGTCtaggtttttttaatttgctgctaAAGACATAATCCTACTAGGTGATCATGATCAAATTATTGCCTTATCCCTTTAAAGACCTGCTGTTTTTGGTGAAGATGTACATAACGCAGGCCCTTTATTATGGACACTATGAAATTGTACTTTGGAGCAATAATGAACTATTAGTCTAGAGGAGTTaactcccccactctctcttcAAGCCGTGAAGTGCATTGAAACGGGTCTTGCTAGTTTACCACAACCATGCATGTGTGTCGCTGATGTAGCAGAACTGTAAAATGCCAAGTTAATCTCCAAATTGGAAAGTGTGCAGAATCCAGAGCGGCGATGTGAGTGTGTTACTGAATTCACATTTCAGTATTAATTCAGATCACTGGGGCATTATTGAGAGACCTTTGCAAActgaaaaactgtattttatttttttaattctgtgatcTTAAGGTTGAGGAGGGGGTTACGCGGCGGGCAAGTTGACAGAGATTTCttgttaatgtatacatttaaaaaatacaaaaatcactttGAAGGTTATGTTCATATGCTTATATAATCTACTCAAATGTAGCCTACGTGgtggatgattttttttttgtcagttgaTCTTATTTCTTTGATTGTAatttcttttatatatacacgTTCTCCAAAGtagcaggaaaacaaatgttgcacATGATATTTTAGGAAATTGACAtgtggttaaaaaaattaaaaaaaatcctactATAATGGCATAACGCTCTGTGTATATGTGAAAACGGCtaacagtttacatttaaaGAGGATTCCCATTTTGTATACTGTGTGAAACTCACAGCACAGATCTGTTATCACTGAG

Function

GO: NA

KEGG:

id description
K09113 MLX; MAX-like protein X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19924 lncRNA upstream 496381 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 607293 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 747256 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 770452 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 775590 31475307 ~ 31476218 (+) True G15961
TU20094 lncRNA downstream 1084 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 177627 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 596924 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 721152 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 919078 33179705 ~ 33179940 (+) True G16350
AMCG00016843 mRNA upstream 6273 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016840 mRNA upstream 35485 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016839 mRNA upstream 44934 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016842 mRNA upstream 55579 32171872 ~ 32196229 (+) True AMCG00016842
AMCG00016844 mRNA upstream 112045 32090034 ~ 32139763 (+) True AMCG00016844
AMCG00016848 mRNA downstream 24129 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016851 mRNA downstream 133254 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016852 mRNA downstream 220037 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016853 mRNA downstream 229286 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016855 mRNA downstream 237255 32497882 ~ 32498508 (+) True AMCG00016855
TU19916 other upstream 517492 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 524791 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1190663 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2014967 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2138524 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 238429 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 238949 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 240169 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 595734 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1408002 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile