RNA id: AMCG00016843


Basic Information

Item Value
RNA id AMCG00016843
length 6230
RNA type mRNA
GC content 0.46
exon number 15
gene id AMCG00016843
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32225792 ~ 32245535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAGCTGTCGTAAAGGTTTCTGTAGTGGAAgagtaacaataacaaacaaacaagtaatgTTTTGATCACTGTTTAAATCATGTTCAACTAGCGCTGTGATTCACTTGAGCAGTACTTACATTTCGGCACGGCAATCCAGCTCAGCCACCAGACCCGTCCAGGATGGCCATGTTTAGCACCGGTGTTCTGGTCCTCACGTCCCCTCTGCACACGCTTCCCCTCCGGATTGCGCCGGTGCTGACCTCGGCGGCTCAGGTCGTGGAGCGCACGCTCTATGTCCACCTTCACCCGGGGCTCAACCTGGGCAGCGCAGCGCAGGCCAGGCCGGTCTACGTCCCCGCCGTGCCTGACGTCTCCAGCCTCATCAGCAAGCTGTACAGCAACGCGGCCGACGTGTGCAGCCACCTGGATGTCCGCGTACTGCTGACCAACATCAGGAACCACAGCCTGGGGGGCAACCCCTTCCCCGCGCCGCAGACCCTCACCCATTCCCCCGAGGTGGTTCTCACGGACTTCGTGGTCCAGGACTCCAGTCAGTCCAACGTAGTGAAGCAGTGCCTCCATACTTATGCAGAGCACTGCTACGCCTGCACGCCTGCTCTGGTCCCAGTGCTGCTCAGTCCGCAGCTGGATTCAGACGTGGAAGAGCAGGAAGGGGGGACCTCGGAGCTGGTGGACACGTACAGCGATGTGGTGGTCGGGGGCACGTTTGACCGGCTGCATGGTGCTCACAAAACACTCCTCAACATCTCCTGCCTGCTGGCGGACAAGCGCTTCCTCATTGGGGTTTCTGACCGTGACCTACTGAAAAACAAGGTCCTTAAAGAGCTGATTGAGCCCTACAACCTGAGGGTTGCCAGGCTGAGAGAGTTCCTGCAGGACATCAAGCCCTGCCTGCATTATGACATTGTGCCCCTGGGCGACCCTTACGGCCCCTCCATCACCGACACCAatctgcagtgcattgtggtcAGTGAGGAGACGCGCAAAGGAGGGGAGGCGGTCAACAGGAAGCGGCTGGAAAATGGTCTGCCGGGGTTGGTCCTGCACGTGATCCAGCTGATTAAAGACGCCCATCACAGCGACATCGAGGAGGAGAAAATCAGCTCCTCAAGCTTCCGTACCCGTCTCCTAGGGACCCTGCTGTCTCCCCCCAAGCAGGAAAACCTGCACATCCCTAGGCTGCCCTATGTGATCGGGCTGACAGGCGGCACTGGCAGCGGGAAGAGCTCCATTGCCAGGCGTCTGGAGGCCCTGGGAGCCGCACGAATCGACAGTGACCAGCTGGGACATGAGACCTACAGACCAGGGGCGCCGGCCTACAGCAGAGTAGTGCAGCAATTTGGCACAGATATTCTGAACGAAGATGGAACTATCAACCGACGCCAGCTGGGCAAGAAAGTCTTTGGAGACAAGGAGAAGCTGAAAGGCCTGACTGATATAGTGTGGCCAGAGATAGCGCTGCTGGTGAAGAAACAGATCAGAGAAGCGGGGGAGAAGGGTAAGACCGTGTGTGTGGTCGATGCTGCTGTTCTGCTGGAGGCTGGGTGGACAGATATGGTGCATGAAGTGTGGGTCGCCATCATCCCAGAGAAGGAGGCAGTGTCCAGGATAATGCAGCGGGACGGCATGAGTGAGGAGGATGCGTGGAGGAGGCTGGCCAGTCAGTGGACCAATGCTGAGCAAGTGCGGCACGCTAATGTGGTGCTGTGCACACTATGGGAGCCTGAGGTGACTCAGAGACAGGTAGAGAAAGCTTGGGAACTTCTCCAAAAGCGAATTCCAGGCAGCAGGAAATCACCCTTGCTTCATAAGTGACATGaactggtaaaaaaaacaataaaaacaatcgCACTACATCAGGAGATGCAGAAGGAATGGGCTTATCCTGCTGGGCCAGTACTAGTCCTGGGATCCTCAATATAGTGCCTGGAATGTAAAACATAGCTGATGACATCTGCAGTATTTATGGGTTCACTATGTGTTACCCTGAGTGGGTTACTGCACCGAACCTGAGTCCTGTGACTGAGAATCTGAGGCTAATGGCGGCACCATTAGGCAATTCAGTTTCTCTAGACAGATATTCTGGGTTAAGTATTTTCTACAATCATTATTCTAAAAATCAACTGGGGTATATGgatatagaaaaaaaacagcaggaatgCTTCACCGCTGTAAACCTGTATAAGGGATGCCCAGTGTAATATTGTCtggaattatatttaatttctttaaccCGTTTGTGTTGGCAAAAGtttaaattttgtatttctttttcttaagTAAGCACACATCTTGGTAGATACTAATTGATACAAATACCaccaacaacaatatatatcataaaGGTCATGTATACTTGGAAAGATGTACAGGAGAccaaaatgtatagattttttttaaatgacaaagtGCTACTGTGTATCTGAAGACtttcttgtttaatttgttgattgcttggtttttggttttgattttaacatggagacaatttaaaacaaatgtaaaacctgTACATTTAGGATGGAGCACTTAACCTAGACCAGGATtcaaattgtttgtattttgattgtttgtaccgaaaagtataataataaaataaaatgcctggAAGACAAATGCAGTTTCCCCAGTCCAGCCCTCAGCAGTCAAAAgaatgtaacattaaaattaagatGCAGTGCTTCTCCAGAATGCGATTCATGCCATCCATCaagattaagaaaatataagCCAGTGGATGCAGTGcatatgtgtaataaaaatcAGAATTCTCCAAGTTTGGAAGAATGGGTATGTGCCTGCTCCATTTTATACTTGGTGTTTACCTGCCCACAGTTGTATTGGCTCTGTCCAGACTGTTCATTTCAGTATCCTATTGCCCTGTGCTGGTTACTCAACACATCCTAAGGGCCAAGGCGTGGGCTAGGTAGTATTGCAGCCATGTTTTGCCTGTGTTTGCTGTATACTTTCCAAATCAAACATCTTACCTAAACAGTTCACTGGAATTATGAtggctgtggaaaGAGATCTGGAGATTCCTTATTTTTTTGGCTCAGGATTTTGGCAGCAACTTCTGAGCTGAAGTGTTAAAATAACTTCCCAGCACACCACCACCTTGTCAAGACGTAAACGGACAGACAGCATGGATTATATAACTACGGCTCCAATGGTAAGTCAGATCCTGGAGGGTAAATCACAATGGTTATATGTGGACCGTCTGTAATTGGATTGTGTCTTACATCACCTCATCTTGATAATGCGCCCTATTTTTACTGCACTGCATGGGGTGCCTGGCACCAGGGCTAGATAACTGACTTTGCTTTACCATTGTGGAGGTTGggatttataaatacacataggCAACACAAAGATCACAAAGCTGGTGTCTGTACAAATTCTGTTAATGAGATAAGTTAATACAATTTGAGCACAACTTGGTTCTTCAAATCCTTGTGGGCTTGAATTAATTAACGAACcagatcatttttatttgcacaAAACAGGGTGAGAAACAAACTGAAGACAGGTCTATATGTTTGATCTTGATATTAAATTGATGAATGggagtttgtatttattgactTGGGACTTCCACGAATTTGTAGTGAAAAAATCTAAGCAAACCTCAGTGTCTGTCTTGACTTTTAACCCAGTTAGGATGCAGACACTACACTAGACTAATACAGACTGTAGATATAATATAGACATAGAAAAGTGATAAAGAGATTGAAGTACAATGTGGCATTTAAACTTTTTCAAACAGTGGAATTGCATAGATATCAGCaatgaggagagagaagaagaaaccCTTCAGTCCATGTGGGTTCATGAAGAATCCTGGTGAATCCAGTTTAATGAAGGACTTTGGCATTTGCCCATGATGAACTTTGCCATGTACACCAAGTTGGCATTTCGAAAGATTTTACCTGCAATAAGATGTTGAAATCCTGACCACTGACTGTTGGGCATTAACCTTGACTCCAGCATTTAACCCGATTTCAGGAGCTAAATTTAAACCAGTGTTTCAAGTTTCAACTATAAATGTAGGACATTGTCCTTAGACCAAAGCAGGTATTGCTTGTAAAAGTTGTGTAATGGAAGTAGTGTACagtacatatatgtattattagtacTTTTATCAGCACAGATTAACATTGTTGCattgcaataaaaaaggaaattaatcaaAGTCACTTATCATCTACATTTACTAAATCAGTACTATAAAAACCTACtgcacaaacatttattttataatggaaGCTTTCAGAGTTCTTAATGTGTTTTGGTCGATCAATGATTAAGCCCAGCCATTAGGACTATTTTGAGAGCATGCACACTTTCATTGCCTTTTCACAAGGTTATGGAAACACACATTTGTGTCCATGTAAATATTCTAAGCTGTGCAGCTGCAGGCATAACTACTGATAGGCTGTCTTAACTCACATTGTCTGTGTTCAGCTGGGATATTTCATACTAAGCACTAGGATGAGTCAGTGTTCAATTActtaacagaaatataattgGTCAATAATTATAGTTGAACTGTTAATAATCTAAAGGAATAAGGAATTGAAAACTGGATCATATGAAGGGAACcagtaatttatatatttatggatATAAGTGGAGTGAAAGACATCCGTATGTATTTCAAAGTTATGTGggatatgttttatataactaATTGTTAGCTGAACGAATGTCTGTGTGTCCTGGGGATGAATTCCTTTAAGGAGGTaccaaaatacatatacaactTAAATACGCACACGCATGCCCTAGGTGCGGAAACCACCTTACGCACAGGTAGAGCGCAAGGACACGCCCTCCCCCCCCTCTGGGACCGCCTCCCTGTGACGCGTCAGGCGAGCCCCCTCGCCTTATATGGGAATCCCCACACATGAGCGCTGTGAAAGTGCGGAGATACACCGGCGTGAAGCAGCCAGGACCATCACCACCATCACAGCTGACTGCCCGGGGTTTTAATCCAGtccaggaaagaaagagagacaaatgGCCATCAAATCGGCGCCTCTGTTGCTGAGAGCTCTTGTGGAAATGCATTCGTCTAAAGTGCTGCAGGGAAGCCTGGCCGGCAGCCGCAGTATCAGGCATCTGGGCTCTTGTGGCATCCTGGCCTCCCGTCGTGCCAGTCTACCCCTCCCCCCTGCAGCCACAACCAGCTGCCCACCCAGCAGGACCTTTCTGAACCTTGCCGCTCCCCTGATCGCCCGACGGATGGAGTACTTTGAAGCCAGGCTGATGGGGTATTCTCCAGAGCAGATGTATGACGTGGTGTCTAATGTGGACAGTTACAAGCACTTTGTGCCCTGGTGCAAGAGGTCAAAGGTTGTTAGGGGGCACAATAGTGTCTTGAAAGCTCATCTGGAGATTGGTTTCCCCCCCATCGTAGAGCGCTATACCTCAGAGGTCACTGTCATACCCAACCACCAAGTCAGGGAAGTGActgggctgtttttgtttcaggctgtgtgCACAGACTGTTCCCTCTTCAACCACCTGGAAACTGTGTGGAGGTTCTGCCCGGGGCCCCCAGACCAGCCAGAGTCTTGCACTGTGGAGTTTCATgTGGCCTTTGAGTTCAAGTCACTGCTGCACTCCCAGCTGGCCACGGTTTTCTTTGACGAAGTCGTGAAGCAGATGGTCAACGCTTTTGAGAAACGGGCGGCTAAACTGTACGGACCTCAAGCCATTGTCCAAGAGAAGGTGGCCTTGAGGAGGACTTCCATCTGACCCCTTAACACCTGAACTCCATTGCCACTTCCACACATCCTTCCATGAAACTCTCTTCTCCCCCCAACACTAAACATGCCACTTATTTGAAGATTGTCTTCAAATTCAATTATTGTCCACATTTTTGATGGACCTATTTTACAAGCCTGTGTTGCAGACCTCTGCAAATGATGCTCTGGGAAACTAACCTGAGCTTTTGAAGACTGTAAGCCTGTGGAACCCAATGCTTAGttgcacattttcacattatttatttcactagtgattttaatttattcacttgaaaatgaaattacataTATGTAGTCTTATAATGAatattattcatgtatgtaaatatgtatattaaactCTTAAAGAGGTTttatcttatttaaattaaatctgttttgaGAAGTTGACTGAAATGCTTGTTGTAATGTTCCTGATGTTTTGTCatatagaatttttttttttttttgtttcgcCA

Function

GO: NA

KEGG:

id description
K02318 COASY; phosphopantetheine adenylyltransferase / dephospho-CoA kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19924 lncRNA upstream 470365 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 581277 31615220 ~ 31644515 (+) True G15995
TU19822 lncRNA upstream 721240 31504079 ~ 31504552 (+) True G15966
TU19813 lncRNA upstream 744436 31479664 ~ 31481356 (+) True AMCG00016820
TU19814 lncRNA upstream 749574 31475307 ~ 31476218 (+) True G15961
TU20089 lncRNA downstream 6279 32251814 ~ 32253229 (+) False AMCG00016841
TU20094 lncRNA downstream 16176 32261711 ~ 32262672 (+) True G16169
TU20144 lncRNA downstream 192719 32438254 ~ 32442585 (+) True G16211
TU20241 lncRNA downstream 612016 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 736244 32981779 ~ 32982330 (+) True G16323
AMCG00016840 mRNA upstream 9469 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016839 mRNA upstream 18918 32198948 ~ 32206874 (+) True AMCG00016839
AMCG00016842 mRNA upstream 29563 32171872 ~ 32196229 (+) True AMCG00016842
AMCG00016844 mRNA upstream 86029 32090034 ~ 32139763 (+) True AMCG00016844
AMCG00016845 mRNA upstream 141220 32074751 ~ 32084572 (+) True AMCG00016845
AMCG00016841 mRNA downstream 6273 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016848 mRNA downstream 39221 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016851 mRNA downstream 148346 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016852 mRNA downstream 235129 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016853 mRNA downstream 244378 32489913 ~ 32495747 (+) True AMCG00016853
TU19916 other upstream 491476 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 498775 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1164647 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 1988951 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2112508 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 253521 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 254041 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 255261 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 610826 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1423094 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile