RNA id: AMCG00016850


Basic Information

Item Value
RNA id AMCG00016850
length 513
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00016850
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32382683 ~ 32383195 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCGCCAAGACTGAGAACAAGGCCATCAAGCTGTGGACCAGGGTCGCCCAGATCACGATTGGGTTCTGCCTGCCTTTCATGGTCATGCTCTTTTGCTACTCGGTCATCATGCGGACCCTGCTGAGGGGGCGCAGTTTCGAGAAGCACAAGGCCCTGAGGGTAATTGTGACCCTGGTGCTGGTTTTCCTCCTCTTCCAGCTTCCGTACAGCGTGGTGCTCCTCCTGAAGACGGCCGGAGTTCATGAGGCTTCCTGCAGCGACTGGGATTCCACCCTGAAGTCAGAATACGTTACGGGCAGCTTGGCCTACAGCCGCTGCTGCCTCAATCCCCTGCTCTACACCTTCGTGGGCGTCCGCTTCCGAAATGACGTGCTCATGCTCCTCAGAGACCTTGGCTGCATCAGTCGGGCCCAGTACTCCTGCCATGTGGCCCCCCGCCAGGACAGCTCCAGGCGCCTCTCTTACGCCTCCAGTTCTGCTGCTTACACGGAAACCTCTTCCATGTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20119 lncRNA downstream 120017 32261549 ~ 32262666 (-) True AMCG00016847
TU20076 lncRNA downstream 174566 32206962 ~ 32208117 (-) True G16153
TU20077 lncRNA downstream 175806 32205723 ~ 32206877 (-) True G16154
TU19968 lncRNA downstream 611409 31769730 ~ 31771274 (-) False G16069
TU20181 lncRNA upstream 9947 32393142 ~ 32393380 (-) True G16244
TU20182 lncRNA upstream 32996 32416191 ~ 32416444 (-) True G16245
TU20185 lncRNA upstream 42521 32425716 ~ 32425956 (-) True G16248
TU20186 lncRNA upstream 44657 32427852 ~ 32428080 (-) True G16249
TU20187 lncRNA upstream 51041 32434236 ~ 32436683 (-) True G16250
AMCG00016849 mRNA downstream 57522 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016846 mRNA downstream 98643 32269963 ~ 32284040 (-) True AMCG00016846
AMCG00016847 mRNA downstream 114715 32261928 ~ 32267968 (-) False AMCG00016847
AMCG00016837 mRNA downstream 380148 31979211 ~ 32002535 (-) True AMCG00016837
AMCG00016838 mRNA downstream 530564 31844462 ~ 31852119 (-) True AMCG00016838
AMCG00016856 mRNA upstream 55041 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016860 mRNA upstream 86700 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016859 mRNA upstream 119370 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016858 mRNA upstream 125154 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016857 mRNA upstream 162424 32545619 ~ 32546814 (-) True AMCG00016857
TU19613 other downstream 1853183 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2180332 30201459 ~ 30202351 (-) True G15706
TU19143 other downstream 3597176 28781472 ~ 28785507 (-) True AMCG00016732
TU18749 other downstream 4954032 27424893 ~ 27428651 (-) True G15076
TU18738 other downstream 4978761 27401676 ~ 27403922 (-) True G15067
TU20184 other upstream 39863 32423058 ~ 32423438 (-) True G16247
TU20188 other upstream 114312 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other upstream 114312 32497507 ~ 32498895 (-) False AMCG00016859
TU20326 other upstream 792881 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 1043293 33426488 ~ 33431085 (-) False AMCG00016889

Expression Profile