RNA id: AMCG00016852



Basic Information


Item Value
RNA id AMCG00016852
length 393
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00016852
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32480664 ~ 32481807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAATGCAGAAAAAAGCCCCACAGTGCACTCTCTTGTGTTGTCAGAGGAGTTCGAGTACCAGGAGAGGTACATTCGAGTCCCCTGCAACGAGAATCTGATGCAAGAATACAGCATGATGTACTGCTGGGAGCCCTTCCACATGGTGATGTCTGAGTTGAAGGAGGAAGCCTGGTGtgactggaataaaataataggGTGCTTCTTCCCCAATCCCACAGTGCAAGAGCTCTTTGTGCAGGTCCACGCAGAGTACTTTGGGAACTGCACTGCAGAGGAGGAGGACCTGATGGACCCCCCCCAGGCTGTGGTTATCACCCTCACCGTGGTTCCAGTGTGCCTGATCCCCTTTCTGGTCGCCCTGGTGGTGTGGAAGAGCAACATCCAGGAGTGA

Function


GO: NA

KEGG:

id description
K08448 RAMP2; receptor activity modifying protein 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20144 lncRNA upstream 38079 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 217992 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 227435 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 725237 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 836149 31615220 ~ 31644515 (+) True G15995
TU20241 lncRNA downstream 375744 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 499972 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 697898 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 698432 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 843287 33325094 ~ 33328342 (+) True G16395
AMCG00016851 mRNA upstream 46526 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016848 mRNA upstream 177195 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016841 mRNA upstream 220037 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016843 mRNA upstream 235129 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016840 mRNA upstream 264341 32210141 ~ 32216323 (+) True AMCG00016840
AMCG00016853 mRNA downstream 8106 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016855 mRNA downstream 16075 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016854 mRNA downstream 17884 32499691 ~ 32503372 (+) False AMCG00016854
AMCG00016861 mRNA downstream 108960 32590767 ~ 32607382 (+) True AMCG00016861
AMCG00016863 mRNA downstream 291268 32773075 ~ 32777472 (+) True AMCG00016863
TU19916 other upstream 746348 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 753647 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1419519 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2243823 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2367380 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 17249 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 17769 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 18989 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 374554 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1186822 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile