RNA id: AMCG00016853


Basic Information

Item Value
RNA id AMCG00016853
length 2984
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00016853
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32489913 ~ 32495747 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacacacacacacaaggaaaggaaagaaaagttgTCCAGTCAGCTGCAGCAGCAGACGGAACACAGGGCACCCGGCACAACATCTGTTAATCGAGAATCACCCTGTCTGTCCTCTAGTCTATTGCACATCCACCCAGCACAATTTCCTGTTATGTTTCGCTCGGCTTATTGTAAAGTTCAGGCTCTCTCTCAATGATTACCGTGGGGGGACAGTACGCCTCATTACAATGAAGAGCGCTTTCCCATTCGGCAAGATTTGCCTTACACTCCTATTTGTTTCAGCTGTCCCAGCAAGAAACAAAGagCCTACAGCGAGTTCACTGAATGCACAGAGATGTTTGCAGAATGTCTGCTCATCCCCTGGCCCAATAAGATGATTGAAGAATTATTTGTGGACTTGCACTCCACGCACTTTAAAAATTGTGACTTGAACGAGTACAACGACCCTCCTCCGGAAATAGTGGGCATTCTGACAATGACGCCCATCTGCCTGATTCCACTGATGGTCACCCTGGTTGTATGGAAAACTAAAAATGGAGATAACAGCTCATAATTCTGCCACAGGGAAGAATACAAGAGCCAGGATGCGAGTAAAACGCCTATTACATAGCAGCTTGAGACCACCCAGGCCAGTGCTACAGGCCCTTGCATATAAACttgatatttcttgtttgttaccTTATTTTGAGCAGACGGCCATAGCTAGGTTAGCATTGAAAgtagaaatagaaatgtatacGTGTACAAGATATTCCTCCGCTtcatttgtgtaatttgtaaaagaCTACAGCATTTCAAATTGCTCAAATTGCTGGGTATCGTGCTGTCAAAGCTGTAGGGTTAGTTTCACAGACTTAGATTAGTACAATATTATTCAGGGTCAGGTAGTCCAAGATTAGTGTTAATCCTGGTCTGTGAAACTAGCTGGTAAAATAGAATGTCCTACTCTGACTACAAATGGCCAGACAGCAGCAGACGAGCACCCATGCACTTATTGAAACTGGAATCAACTAAAGAATGTAACTGCTTAATAACATGTATCTAAACCTCTTTCATTGGCATCACTCTCAGAAGTCTGAATGTGCAATGTAAACCAACAAGTAGTCGCAATGCTGCAATCAAGCTTTGATTTCATATAGATCAATATCTACTATCGAGTGAAAGAGCTTGGCATGGCTGGACTTCATtgtaggtttgtttttgttttagcttttttttctgtaaaactgGGGTGGTCCCTTTGGCGTCGTAATTCCCCCAGACTTTcatacagtatattgttttcTGGCTTACATCTTAACCAcaacagacaaaacagaaaacaaaaaagttgaaaatgaTGAAAGCTAGAACAGGAGGTCGTTCCTGAAGCTGAATTGATTTGGTTATGTTGGTTTGCATTAGTCATCACCAGACCCATCTGTTAGGATCCCTTCCAGTCATCAGGCCCAGTCAATAGCCAACCAGCATTACTTCTTAGATTTAGTGTAAAAGATGGGTCATTTTATATATGACCATAATTTATGGCTTAActcaggggtgtcagactccagtcctggggggccgcagtgtctgctagTTTTTATTCCAATAGGagatcccaattacttaattaaatgttatttactcaggtaggcttatctaaaacttgaatattttttttgtatagccAAAACCTTACCATTTGTTgattactcaaaacattgaacccacGGAACATTTCAGaatctggagagaagtgttaaatgtatcaagttaattgattaattagaccaattaaggtcCCTAGAGCTGGACTGGAgtgaaacccagcagacactgtggccctccaggacttGAGCCAGATACCCCTGGtttaacagattattattatcatcatataataataattattattattattattctacttGGGGGTAACATGACATATCTATTCTGTTTGAAAGGTTAGGACCAACTGGCAACCCTAGTCACAACCTGAAGAAATTTAGAGGACTGCAGGCTATTAAAATACAAGGGAAAGTCTGTACattgataaaaacattttggtttcaATTTTCAGATAAACAAACTAACCCATCATATGATTACTTTGATGATGAAAATTTGTGCAGTCCAACTAACTGGGAAGATGTTGTGCAATATATTTGCTGTGTGAGGCAATAACTTTATTACTATGAACTGGTAGTTTTTCTGTTTGATGCTCCTGCGTGCTCAAAGCAAAAGTCTGGTGTCAGCTCCTGTAAACACTTTGGCCAAGACAGCTGATACTATACCTCAAACAGAAATTACCTGCATTTATATGCAGAAAGCAAACTTGCAAGTTGTTGAGCTACTGTCAAATATTTAAGTATGggtgaaaaggaaaacaattccAGGAAAAATAAGTCTCCCAATCGTTTTCCTGGAATTGTGTTGCCCTCCATTGCTACAAATCCCAAAACTTTCATTTGCAATGTAACACTGGACGCGTGCCCTCCGAGCTCCAATGGGCATTAGACTCATGAAGAATGTGACTCtggagaaaacaagaaaacatgttaGTTAGTAACACAAATTGTGACCTCCGCTTTCTGAGGTAGTACAAAGACATAAGTCAAGCTGCTCATTaacaattcgtttttttttatgttttctgatttaaaaaaatatatatgtagttgGATGGCAAGACCTAGAGCAATAAATCTTTGGAAAGTGTTGAACGACCTATGATTGCattgttaaatttaaatatattcacctAAATGAAGAAATGTAGAGTTCTGTTGTGAAATTGTTAAGTCTTTGATTTCCagtgcactttttaaaaataatttgctagTAATACCTGGTTACTAATTATAAATCGTTATATTTGCAATTATACTCTTACATTCCAAcacttcaatgtatttttttatggcTGTTTACCTACTGACTACAGACTAGCtttagtttgtttatgtattattggGAATAAATTTTATATTAACCTCA

Function

GO: NA

KEGG:

id description
K08448 RAMP2; receptor activity modifying protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20144 lncRNA upstream 47328 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 227241 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 236684 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 734486 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 845398 31615220 ~ 31644515 (+) True G15995
TU20241 lncRNA downstream 361804 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 486032 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 683958 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 684492 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 829347 33325094 ~ 33328342 (+) True G16395
AMCG00016852 mRNA upstream 8106 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016851 mRNA upstream 55775 32393881 ~ 32434138 (+) True AMCG00016851
AMCG00016848 mRNA upstream 186444 32284756 ~ 32303469 (+) True AMCG00016848
AMCG00016841 mRNA upstream 229286 32251808 ~ 32260627 (+) True AMCG00016841
AMCG00016843 mRNA upstream 244378 32225792 ~ 32245535 (+) True AMCG00016843
AMCG00016855 mRNA downstream 2135 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016854 mRNA downstream 3944 32499691 ~ 32503372 (+) False AMCG00016854
AMCG00016861 mRNA downstream 95020 32590767 ~ 32607382 (+) True AMCG00016861
AMCG00016863 mRNA downstream 277328 32773075 ~ 32777472 (+) True AMCG00016863
AMCG00016865 mRNA downstream 314338 32810085 ~ 32856301 (+) True AMCG00016865
TU19916 other upstream 755597 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 762896 31721939 ~ 31727017 (+) True AMCG00016829
TU19688 other upstream 1428768 31059340 ~ 31061145 (+) True G15855
TU19453 other upstream 2253072 30236454 ~ 30236841 (+) True G15659
TU19434 other upstream 2376629 30109599 ~ 30113284 (+) True AMCG00016770
TU20166 other downstream 3309 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other downstream 3829 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other downstream 5049 32500796 ~ 32503256 (+) False AMCG00016854
TU20240 other downstream 360614 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 1172882 33668629 ~ 33672620 (+) True AMCG00016901

Expression Profile