RNA id: AMCG00016858


Basic Information

Item Value
RNA id AMCG00016858
length 3186
RNA type mRNA
GC content 0.62
exon number 14
gene id AMCG00016858
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32508349 ~ 32533759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCCAAATCCGATTGCTCAGTCCCACTTGGCTAAAAGACTTTGCGGCGAGGATCCTGCAGCTTACAGGGGAATGAAGCCCAATAGCTTCTTCAAAGTGAAGGTCCCTGAGCTGAAAGAGATCATCGAAGGGTGCATACGGATGAATAAAGATGAGAGGTACACCATCCAGGACCTGCTGGAACACTCCTTCTTCCAGGAGAACAATGGTGTCCACGTGGAGCTGGCCGAGGAAGATGACTACATCAAGTCCGGACTGAAGCTGTGGCTGCGTATGGATGACACCAAGAAGCTGCACGGAAAATACAAGGACAACAACGCTATCGAGTTCCTGTTCGAGCTCTACAAGGATGTGCCAGAGGAGGTGGTGCTCGGCTTTGTGTGCGAAGCCGACTTCAAACTGGTGGCCAAGGCAATTCGAGACCGCGTGACAGCCAtcaagagacagagggacaaaCAGCGCCGGCTAGAGGAGgagcagaagaagaggagggAGCAGgaaggaggaggtggaggaggagtgggtgaggaggaggaagtgcGAGAGCAAGAGCGGGCCCTGCTGAAGCTTGTTGGCCAGACTACGGACATCCCAGCCCAGCCCCGGAGTCCGCCGTCCCTCACGCCCACCAGCGCCGCCCCCTCCCCGGCCACCGGCTCGGCTGACTCGGGCATCAACGCCAACTTCCCCGCAGAGCCAGAGGAGCCCGAGGCAGACCAACACCAGCACTACCACATCCGCCACACCAGCTATTCCTCCGCCACCTCGAAACCTCCCCCTTCCCAGCCCTCCGCTTCCCCTCACTATGCCTCTGACGTGACGTCGGGCATGAGCGATGGGAACGAGGGTCTGTCCGTGCCGGAGAAGAACGGCAAAACCCAAGCCAAACGCACCGCCGGCAAGCTGTTCAGGAGGAGAGCACGCTCCCGTCTGCGCATCATCAGTGTCTCGGACAAAGTGGACAGAGTGGTGGAATGCCAGCTGCAGacccacaacaacaaaatggtaACATTCAAATTCGACCTGGACGGGGACAACCCGGAGGACATTGCAGCTGTCATGCCCAACCTGCACTCGTATGGACTGGCTCGCACCCACTCCTCATCTTCCTTGCCGGAGTATGGCTGTGCCAGTCCGAGCCAGGTGATGCCTTCTCCCGTCAGGAGTTCTGCGGGCAGCCCCGACTCAGGCAGGGACTTCTACATCGACTCAGACGTTCCGTCACCCAGCCGCCCCGTCCGCTCCCAGTCCTTTCACCAGACTCCAGAGTCTCCACAACTGTACCATCATGCCTACCAGACAGGAGGGATCCCGCACCCAGCATCACATACCCAGATGCCCCATATGCATCACTACCCGTCTCCGCCCTTCATGCCCAGCAGCAATTTCCCCTTCTACCCTAACTCCCCCAAGCATACCATGGCACACCCACTGTCTGCCAACAACCTCCAGAGCTTCTCCTCATCCCCCGGCTCCCCGAGTCCACACAACCCACTACAGCCGGGCCCCCACGGGGACGCCCAGAGCTCGGCGAGTGATGGCAGTCCCCTGTCTCCTCCAACACCGCAGCAGCAGCACCCAGGCCTGTGGCCCGCCCACTCCCAGCCCCTCTTCTCCCTGGCTAATGTGCTGTCCCTAGCGATGAGCGTGGCCCACTCCTTCATGCCCAACCCCAGCTCCCTACCCCAAGGCTTGGCCCCTATGGGCAGCTACCACCACCAATTGGGCCCACAGTCTGGATACCACCCCGGCTTCGCCCCCCAGCCCCAGACACATCTGCCCAGTGAGCCTCTGTACCACACTGGGATGTTCGCTGGGCACGGCGGGCAGCCCAACCCCTACCAGTTCCCCGATAACCAGGCTCAGACACAGCTGCAGCTGAGCCTGGCTGATATCCAGGAGGCCGGGTTCATGCCCATCCACACGGGCTCAGGCTACCATACCATCCCACTGCAAAACCAGCCCCCTGAGACCCCACCCATGCCACCTCCCTCTTCCCTGCCGGGGCTGCGCAGTCACCCTGGCCCTGGGAGTCCTAGTCCCCCCCCGAActcccctctcccccacccccaggcCCATACACTTCCCCCCACAGCAGACAGGACCGGGAgtcctgtccctccctccccagcACAAGCCGACATGCCGGGGTCCCCCACCACCCCAACACCAGATGGATCCCATGGCAGTGTGTCCTCATCCAGCCCCAAAACCCTGTCTCCCCTCGTGCTCTTCGAGTCCTCTGCGAACTCGGCCAAGGCCCGGCTGTCTCCTATCTGTGAAGAGCAAAAACCCACGGTGACTGTGGGCAGGTTCCAGGTGACACCCAGCAAAGAGGCACTAGAGCCCTCCACTGCCCCTGCCCCGACTGCCCCACCTGCCGCCAGCGCCCCCTCACCCCAagagagcgagacagagagCAGCACCGAGGAGCAGGCCGAGTCGGACCCCAGCCCCAGCAGCTCTCTCACTGTCTCGCTCCCACACTCCCCACCGGGCCCCGAGCACAGGGGCAGCGAGAAGGAGAGTCCGAGCGAGAgcgacagggagagggagagagaggccgGCCCTAGCCTAAccatgggagagagagaggatgaggaggaggcaaaggaggaggtgggggagagagaaagagggttGGATTGCACCCCTCTCGGTACCTCGGCAGACAGCGGGCTCTCTGTGACCGCGCAGGAGCCAGAGAGCCGGGGGGGGGACGGCAACCCTGGCAGCCCCCAGAACAGCCTGCCCATGCACGTGTGGATGCACTACTCCCACCCCTATATCAGCAGCGATGACACTGAGAGCGACGACGACGACATGTGGGAGGAGCTGCAGGTCCTGCGCGACAGACACCTGTCAGAGGTGCAGTCCCTCCAGGCCGTTCAGAAGAGGGAGATTGAGGAGCTCTATGAAAGGATGGGGAAGGTGCCCCCCCCTGGCATCGTGTCCCCTGCTGCCATGCTGTCCAGCCGCCAGAGACGCCTGTCCAAAAGTGGAGGATTCAACCCTTCCCGGAGAAACAGCCTACAGAGACTGGAAATCCTGCCTCCCACAGGGATCATGAGGAAGAACTCGTTCagtggcagcagcagcggctCCCAGGAGCGGTCTGGCAAAGGGGTGACCTTCGCTGCTGACTACAACAGAATGGTGAGCACTGGGGCTGACCGGCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20187 lncRNA downstream 71666 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 80269 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 82393 32425716 ~ 32425956 (-) True G16248
TU20182 lncRNA downstream 91905 32416191 ~ 32416444 (-) True G16245
TU20181 lncRNA downstream 114969 32393142 ~ 32393380 (-) True G16244
TU20246 lncRNA upstream 321022 32854781 ~ 32857465 (-) True G16292
TU20247 lncRNA upstream 325482 32859241 ~ 32861597 (-) True G16293
TU20285 lncRNA upstream 450495 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 721894 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 750255 33284014 ~ 33284227 (-) True G16377
AMCG00016859 mRNA downstream 1030 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016860 mRNA downstream 38242 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016856 mRNA downstream 38723 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016850 mRNA downstream 125154 32382683 ~ 32383195 (-) True AMCG00016850
AMCG00016849 mRNA downstream 183188 32304650 ~ 32325161 (-) True AMCG00016849
AMCG00016857 mRNA upstream 11860 32545619 ~ 32546814 (-) True AMCG00016857
AMCG00016862 mRNA upstream 50260 32584019 ~ 32590534 (-) True AMCG00016862
AMCG00016864 mRNA upstream 140558 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016867 mRNA upstream 329487 32863246 ~ 32871525 (-) True AMCG00016867
AMCG00016868 mRNA upstream 387246 32921005 ~ 32922249 (-) True AMCG00016868
TU20188 other downstream 5097 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 9454 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 84911 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 1978849 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2305998 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 642317 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 892729 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 954966 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1572931 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 5224398 37758157 ~ 37758471 (-) True G17032

Expression Profile