RNA id: AMCG00016862


Basic Information

Item Value
RNA id AMCG00016862
length 1069
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00016862
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32584019 ~ 32590534 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTTTGAGTGGCCTTGGCAGTATAACTTCCCTCCCTTCTTTACGTTACAGCCTAATGTTGACACCCGGCAGAAACAGCTGACTGCATGGTGCTCGTTGGCGCTGTCGTTTTGTCGGCATAACAAACTCTACACACTGGACATAATGGAAGCCCAGGAGAGCCCGATTTCAGGGAAGCTCTCCACAGAAGCCATTCAGGTTTCCAAAAACGGAATGACAAACTCTGTGTTCACACTATTTGAGCTGTCTAATGGAGACGATACAGAGAGCGAAGAGTTCCACGGGCTGGAGGAGTGGATGTTGCTGCGGTCCCTGCAGGCGCTTCAGACAGATGGCAAGGCCGAGATCATCACTATGAATGATGGGAAAGGAGTGAAGTTCTTCTGAGGAGAGCACTGCTGTGACAGGGTGGACTGTGAGCTGGGGCCACGCTGGATAGATGTCGGTCTGATATGATGTGTCCGTTTCTGGAACTAAAGAGTCAATTGTGTCTTCCGTCAAAGGAACAAGGGAAACGCGTGCTCCCTAATTGTTTGTAATCTAGactgatgcaaaatatttaaggAAAGTCCCCTGACCTTTGTTTGGGGGCCGATTTTGATTagataaaaaaaggaataaaggaaaatgtaaagcatGCCTTCCCAGATGAGATCTCTCTACTCttcttttccaaaatgtttttaccagcgtttttattattattattattattttattttgtttactttatttaatgaCCTTCAGAAGATATAATGTGTTGGGTCTCTGAGCTCACATCAAGCATTTCTGGTCAGCTGCagaaaagtctctctctctcctgaagcGTGTGGTGGATATATACAATTCTTACTGGAAAATACTTGGTTTTGGTACTgggagcatttttttttttctctggtaAGAGCATGGACAAGGGGTTTAGCTACTGTAGATTGTGCTGGATTTTCCTGTTAGGATGTTTTAGccatgtctttttctttgtattcCACCCCCTTTTACATTGAGGgtgaactgtaaaataaatagaaattaaatgaaaaacagatgtgtgtgttcCTTCTGC

Function

GO: NA

KEGG:

id description
K12189 VPS25, EAP20; ESCRT-II complex subunit VPS25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20187 lncRNA downstream 147336 32434236 ~ 32436683 (-) True G16250
TU20186 lncRNA downstream 155939 32427852 ~ 32428080 (-) True G16249
TU20185 lncRNA downstream 158063 32425716 ~ 32425956 (-) True G16248
TU20182 lncRNA downstream 167575 32416191 ~ 32416444 (-) True G16245
TU20181 lncRNA downstream 190639 32393142 ~ 32393380 (-) True G16244
TU20246 lncRNA upstream 264247 32854781 ~ 32857465 (-) True G16292
TU20247 lncRNA upstream 268707 32859241 ~ 32861597 (-) True G16293
TU20285 lncRNA upstream 393720 32984254 ~ 32984464 (-) True G16325
TU20354 lncRNA upstream 665119 33255653 ~ 33256382 (-) True G16375
TU20356 lncRNA upstream 693480 33284014 ~ 33284227 (-) True G16377
AMCG00016857 mRNA downstream 37205 32545619 ~ 32546814 (-) True AMCG00016857
AMCG00016858 mRNA downstream 50260 32508349 ~ 32533759 (-) True AMCG00016858
AMCG00016859 mRNA downstream 76700 32502565 ~ 32507319 (-) False AMCG00016859
AMCG00016860 mRNA downstream 113912 32469895 ~ 32470107 (-) True AMCG00016860
AMCG00016856 mRNA downstream 114393 32438236 ~ 32469626 (-) True AMCG00016856
AMCG00016864 mRNA upstream 83783 32674317 ~ 32692351 (-) True AMCG00016864
AMCG00016867 mRNA upstream 272712 32863246 ~ 32871525 (-) True AMCG00016867
AMCG00016868 mRNA upstream 330471 32921005 ~ 32922249 (-) True AMCG00016868
AMCG00016871 mRNA upstream 331895 32922429 ~ 32924404 (-) True AMCG00016871
AMCG00016870 mRNA upstream 336497 32927031 ~ 32930813 (-) True AMCG00016870
TU20188 other downstream 80767 32497507 ~ 32503252 (-) True AMCG00016859
TU20192 other downstream 85124 32497507 ~ 32498895 (-) False AMCG00016859
TU20184 other downstream 160581 32423058 ~ 32423438 (-) True G16247
TU19613 other downstream 2054519 30526292 ~ 30529500 (-) True G15787
TU19522 other downstream 2381668 30201459 ~ 30202351 (-) True G15706
TU20326 other upstream 585542 33176076 ~ 33178883 (-) True G16356
TU20415 other upstream 835954 33426488 ~ 33431085 (-) False AMCG00016889
TU20442 other upstream 898191 33488725 ~ 33513579 (-) False AMCG00016891
TU20574 other upstream 1516156 34106690 ~ 34107941 (-) True G16563
TU21119 other upstream 5167623 37758157 ~ 37758471 (-) True G17032

Expression Profile