RNA id: AMCG00016863



Basic Information


Item Value
RNA id AMCG00016863
length 648
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00016863
representative True

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32773075 ~ 32777472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGGAGGCGGCCAAGGGGCAAGGCCCACTGGCTGGCACAGCGGGGGCGCAGGTTTCCCCAGCTGAGGGGCAGGGTGCCCAGGCCGAGCACGGATGGACTTTGCCTCACCAGCCTCCTGGGCGCCCTGCCCATGAAGACCAGGCTGTCTGAGGGGGAGGTGGCCTATCTAGTAGTGTGCCAGATGGTGAGCCCCCCTCCCCAGCCCGGGGGCAGCATGGGGGGCAGCCCCGGCCTCAGCCCCTCAGGTATGGACCTCCTTGGTTGGCGGCCCCGCTCTCACTCCCTGTGCTCTTTCTGCTCCTCCTCCGCAGATGGTGGGAGCGAGGACCCCGGAGAGCACCGTCCCCCCAATGTAGAGCCCAGACTCACCCGCACCGGGCCAGgtggcagttccacagacagCGACTGTGTGTTCGAAGGAGACTACCCTGTGCCACCGCTCCCGGTGACAGAAGGCATGCAGCACATCCGGATCATGGAGGGCATGTCTCGCTCACTGCCCTCCTCCCCTCTGCTCACGCACCAGGCTATCAGTGTCCGGCTGCAGCCCATGAAGAAACTCACAGGTACAGCCAACCGCCCCATCTCCCCCAGCTTCCCAAATCTCTCGATTAACCCGCCCACTAATATGGTCAATAACTTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU20144 lncRNA upstream 330490 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 510403 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 519846 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 1017648 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 1128560 31615220 ~ 31644515 (+) True G15995
TU20241 lncRNA downstream 80079 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 204307 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 402233 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 402767 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 547622 33325094 ~ 33328342 (+) True G16395
AMCG00016861 mRNA upstream 165693 32590767 ~ 32607382 (+) True AMCG00016861
AMCG00016854 mRNA upstream 269703 32499691 ~ 32503372 (+) False AMCG00016854
AMCG00016855 mRNA upstream 274567 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016853 mRNA upstream 277328 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016852 mRNA upstream 291268 32480664 ~ 32481807 (+) True AMCG00016852
AMCG00016865 mRNA downstream 32613 32810085 ~ 32856301 (+) True AMCG00016865
AMCG00016866 mRNA downstream 118287 32895759 ~ 32921227 (+) True AMCG00016866
AMCG00016872 mRNA downstream 209108 32986580 ~ 32989958 (+) True AMCG00016872
AMCG00016873 mRNA downstream 235446 33012918 ~ 33021870 (+) True AMCG00016873
AMCG00016875 mRNA downstream 257830 33035302 ~ 33109567 (+) True AMCG00016875
TU20166 other upstream 269819 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 269819 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 269819 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1038759 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 1046058 31721939 ~ 31727017 (+) True AMCG00016829
TU20240 other downstream 78889 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 891157 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 1269899 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 1322843 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5718579 38496051 ~ 38503632 (+) True G17193

Expression Profile