RNA id: AMCG00016865


Basic Information

Item Value
RNA id AMCG00016865
length 5937
RNA type mRNA
GC content 0.63
exon number 27
gene id AMCG00016865
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32810085 ~ 32856301 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCAAAATGGGTAGTGTCTTCCCTCTTCCACACCTGGGGGAGTCAAACCAGGAGCTGGGACCCCCTCCATCTGTGGATGAGGCTGCTAACACCCTGATGACGCGCCTGGGATTCCTGCTGGGAGAGAAAGTGAACGAGGTGCCCCCCGGAGCCCAGTACAGCATGGAGGAGCAGGACGAGAACCAGAGCTCGGCGGTGACCCAGCGCATCAGCCCCTGCTCCACACTGACCAGCAGCACTGCCTCCCCCCCGGCCGGCAGCCCCTGCTCCACCCTCCCCCCCGCCACTGCCGGCAACCCAGGCAACAAGGACTGCGCCTACGGTACTGTCACCAGCCCCACCTCCACCCTGGAGAGCCGGGACAGCGGGATCATCGCCACCCTGACGAGCTACTCGGAGAACATGGACCGGGGAGGCAAATACGGCGAGGGTTCCCGAGGCAACCTGAAGCCCTGGCAATCTCAGAAGTCGGGCATGGACTCTTGCCTGTACCGGGTGGATGAAAACATGACCGCCTCCACCTACAGCCTCAACAAGATCCCAGAGCGCAACCTGGAAACCATCTCCTCGCACTCCGTGCAGTCCATCCCCCTGTACCTCATGCCTCGGCCCAACTCCGTGGCAGCCACCAGTTCCGCCCACCTGGAGGACCTGGCCTACCTGGATGAGCAGAGACACACCCCCCTGCGCACCTCCCTTAGGATGCCGAGGCAGACCATCGGCGCTGGACGCTCTGGCCAGGACCTGCGAGCTTGCACTAACATCCATGCCTGGCACTCTCACTCACTGCGCTTCGCCCCCTACCGGCCCCCCGACATCTCCCTGAAGCCGCTGCTGTTTGAGGTGCCCAGCATCACCATGGACTCGGTGTTCATCGGCCGCGACTGGCTCTTCCAGGAGGTGGAGGGCCAACTGCGCAGTGCCAACTCCAACACCAACCGCGGCGTGGTCATCGTGGGCAACATCGGCTATGGCAAGACCGCCATCGTCTCCCGCCTTGTGGCCATGAGCTGCCACGGCACCCGCATGCGGCAGATCGCCTCTGACAGCCCGCACGCCTCACCCAAACATGGAGATGGGAATAGGGATTTGCCCCTGAGCCAGCCCCAGCCCTCCCATGGCACCCTGGGTGGGGGCAGCTGCCCTGGGACCCCTGAGATGCGTCGGCGGCAGGAGGAGGCTATGAGGCAGACAGCTCTGAACCACACAGAGCCGGCATGGGGTCTCACAGGGGCCACACAGAGCCGGGACGGGGTGGTGGCGTACCACTACTGCCAGGCAGACAATGCCTACACCTGCCTCGTCCCGGAGTTCGTGCACAACGTGGCGGCGTTGCTGTGTCGCTCACCACAGCTTATCGCCTACCGGGAACAGCTGCTGCGAGAGCCCCACCTCCAGAGCATGCTCAGTCTGCGCTCCTGCGTTCAGGACCCCCTGGCCTCCTTCAGGAGAGGCGTACTGGAGCCCCTGGACACCCTGTACAAAGAGAGGAAGATTGCCGATGAAGACCTCATCATCCTGATCGACGGGCTGAACGAGGCAGAGTTCCACAAGCCAGATTACGGCGATACTATTGTCTCCTTCCTGAGCAAGACCATCGGCAAATTCCCGCCTTGGCTGAAGCTGATTGTCACTGTGAGGACCACACTGCAGGAAATCACCAAACTGCTGCCCTTCCACCGGATCTCTCTGGACCGACTGGAGGAGAACGAAGCCATCGACCAGGACCTGCAGGGCTATATCCTGCACCGCATTCACTGCAGCCCCGAGATCCAGAATAACATCTCGCTAAACGGCAAGATGGACAACACCACCTTTGGCAAGCTGAGTGCCCACCTCAAGGCCCTGAGCCAGGGGTCCTACCTCTACCTGAAGCTGACTTTCGACCTCATCGAGAAGGGCTACCTGGTGCTCAAGAGCTCCAGCTACAAGGTGGTGCCGGTGTCCCTGGCCGAGGTCTACCTCCTGCAGTGCAACATGAAGTTCCCCACGCAGTCTTCCTTCGAGCGCGTGCTGCCCCTGCTCAACGTGGCCGTGGCATCCCTGCACCCATTGACCGATGAGCAGATACACCTGGCCATCAACGCGGGCTCCGTCCAGGGCACCCTGGAGTGGGACGACTTCCAGCAACGCATGGACAACCTCTCCATGTTCCTCATCAAGCGGCGCGACGGCACGCGCATGTTCGTTCACCCTTCCTTCCGAGAGTGGCTCATCTGGAGGGAGGAGGGCGAGAAGACCAAGTTCCTCTGTGACCCCAGGAGTGGACACACCCTGCTGGCATTCTGGTTTTCCCGACAGGAAGGGAAGCTTAATCGGCAACAGACCATTGAGCTGGGTCACCACATCCTCAAAGCACACATCTTCAAGGGCCTAAGTAAGAAGGTTGGGGTTTCCTCATCAATCCTGCAGGGACTATGGGTGTCGTACAGCACAGAAGGCCTCTCCACGGCCCTAGCCTCACTGCGCAACCTCTATACACCCAACATTAAGGTAAGCCGGCTGCTGATCCTGGGCGGCGCCAACGTGAACTACCGCACAGAGGTGCTGAACAATGCGCCCATCCTGTGTGTTCATGCCCACCTGGGCTACACCGACACTGTGGGGATGCTGCTGGAGTTCGGTGCCAGTGTGGACTCCAGCTCCGAGAACGGCCTCACTCCCCTGGGCTACGCTGCCGCCGCTGGGCACCTTCCCATCgtgGACCATCTGGACAAGAACGGCCAATGTGCACTGGTACACGCGGCACTGAGAGGTCACCTGGAAGTGGTGAAGTTCCTGATCCAGTGTGACTGGACAATGGCCGGCCAGCAGCAGGGCGTGTTTAACAAGAGCCACGCTATTGTGTCCTACTTGCTGGACCTCCCTGAGAAagatgaggaggaggtggaACGTGCCCAGATCAACAGCTTTGACACCCTATGGGGAGAAACAGCCCTGACGGCAGCTGCAGGCAGAGGGAAGCTCGAGGTGTGCCGGCTGTTACTGGAGCAGGGGGCGGCTGTGTCTCAGCCCAACCGGAGGGGGATCGTGCCGCTATTCAGCGCTGTGCGGCAAGGGCATTGGCAGATCGTTGACCTGCTGCTCACTCACGGGGCCGACGTCAACATGGCAGACAAACAGGGCCGCACCCCTCTGATGATGGCTGCTTCTGAGGGTCACCTGGGGACCGTGGAGTTCCTGCTGGCACAAGGCGCCTCTCTATCTCTGATGGACAAGGAGGGGTTGACGGCTCTGAGCTGGGCCTGTCTCAAAGGCCACCTGGCTGTGGTGCATTCCCTGGTCGAAAGGGGGGCCGCCACTGACCATGCTGACAAGAACGGACGCACGCCACTGGACTTGGCCGCTTTCTATGGCGATGCTGAGGTGgttcAGTTCTTGGTGGATCACGGAGCCATGATTGAGCATGTGGACTACAGTGGGATGCGCCCCTTGGACCGAGCTGTGGGCTGCAGGAACACCTCGGTGGTAGTGACCCTACTTAAGAAAGGAGCCAAGATAGgctgtCAGACCCTGCCCAGTCGGCCAAAAGGTCCAGCTACATGGGCGATGGCCACTTCCAAGCCTGACATCATGATCATTCTGCTGAGCAAACTGATAGAGGAGGGCGACAGCTTCTATAAGAAGGGGAAGGTGAAGGAGGCGGCTCAGAGGTACCAGTACGCCCTGAAGAAATTCCCCAGAGAAGGTTTCAGTGAGGACCTCAAGACTTTCAGAGAACTCAAGGTTTCCCTTCTGCTCAACCTCTCCCGGTGCCGCAGGAAAATGAACGACTTTGGAATGGCTGAGGAGTTTGCCACCAAGGCGCTAGAGTTGAAACCAAAATCATACGAGGCCTATTACGCCAGAGCCCGTGCCAAGCGCAGCAGCAGGCAGTTCCCAGAAGCCCTGGAGGACCTGAATGAGGCCATGAAGCAGTGTCCCAACAACCGCGAGATCCAGCGGCTGCTCCTGCGAGTGGAGGAGGAGTCCGAGGagccccctccacctcctgagCCGCGTCTGGAGGACATGGAGCCCGTGCAGGACCTCTTTGAAGATGAGGACTACCTGGAGCGGGAGATGGAGGGGGTGTCCATGGGCCTGTCACCCGAGCCCAGGGCCAACCCCCCCAGCTTGCCCATCATCCAGAGCCCCCCACAGTCCCCTGCCCACCGCGACTCGGCGTACCTCTCGGGGGGCTCCCCACTGGGCCAGTCCTTTGATTTCCGCCCGAGCCCTCCATCCATGGCCTCCCCGACCCGGCAGGGCTACCAGTCCACCTCGCCGTCCCTCTCGCCCACCCACCAGAACTCCCACTACCGGCCCAGCCCCCCCCATACCTCCCCTGCGCATCAGGTCCCTTCCTACCGCTTcagcccccccccgcccctggGTGGCggtgggggcgggggagggggcCAAGGCAAGGACTACCAGAGCCCCCCTCCGTCCCCCCTGCGCCGGGGCCCCCAGTACAGGGCCAGCCCTCCCACAGAGAGCATCTGCCTCTACCGCCCCCAGTCGGGCTCCCCTGTGCGGTACCAGCAGGAACAGCTGCCTGGGAGGCCCAAGTCCCCACTGTCTAAGATGAGCAGCCAGCGCTCCTATCAGCTGACCTCCCAGTCCTCCCAGTCCTcccagcaccagcagcagcagcagggcctGAGGCTGCAGCCGGCCAAGGCCCAGATTGTGCGCACTAACCAGCCCAGCTCAGCGGTGCACTCCAGCGCTGTGATGGGCAGCAGCGCCTACGGCCAGATGGCACACCCCATCAGCAGCCGCTACCAGGGCGGCTCAGTGGACGTGGAGAGCCGGCTGATGTACCAACCTTCCCTGGATGGCCGGCCTATGCCACAGGTGCAGGCCAGTCTGAGCGCTGGGGCCATCTGCCAGCATGGCGGGCGTGGTGGGGGAGTAGATTCAGGACTGGTGAAGGAGGAGCTCCCCCAGCGGCCTTCCTCAGCGTACCGTGGCAgtggtggaggtgggggagggggcccCGGGGGGATGCGCTATGGCCAGACCCCGCAGATCAGCCGCAGCCAATCGGCCGCCTACTACCCCGTGTCCAAACACGAGCTAGAGCGTGCCGTGGGCCTGCCCCAGTGCCAGCTGGGCTCCCCAGAAATCCCCCACTTAGTACGGCGGCCAGTCAGCGCCAACCCCTCTGAGATCAAGCCCCACCCTCCGACCCCTCGGCCCCTGATCCATTCCCAGAGCGTGGGCCTGCGCTTCTCCCCATCCAGCAACAGCCTGTCCTCCGGCTCCGCCTGCAACCTAGCCCCAGGCTTCCGGCCCTCAGCATCCATCCAGCAGATGGAGATCCCCCTGAAGCCATCCTACGAGCGCTCCGGCGACGACCTCTCACCCGTGTCCCCCTCGCAAGGTGGCGGTGGGGGTGACGGCAGGGGCGGCGGGGTGTACCAGGTAGAGACCTCCCGCTCCCGGACCACCCCCTTCATGGGCATCATCGACAAGACGGCACGGACTCAGCAGTACCTCCACCAGCCGTCCCGGCCCTGGGCCGTGTCCTCCCTGGACACGGTCATCACCAGCCCCACCTCCCCCGGCAATCTGATTCAGCAGGTGGGTGGCGGGGGCAGCGGCTCCTCCTacagcccccccacctccctggGTAACATCGCCTACTACAACAAGACCAACAACGCCCAGAACGGCCACCTGCTCGACGATGAGTACTACACCCAGCCCCCACAGCCCTCCCTGTCCAAACTGGCCAACGGCTCCCGGGTGGGGGGCGGTGGAGGTGGGGACATCTTAGAGAGGGTCAGCCAGGTACCCACATACCCAGATGTCAAGGTGGCGCGGACACTGCCCGTTGCCCAGGCCTACCAGGACAGCATGTACAGACAGCTCTCCCGGGACTCCCGGCAGGGACAGACGTCGCCTATTAAACCAAAGAGACCATTTGTGGAGTCGAATGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20144 lncRNA upstream 367500 32438254 ~ 32442585 (+) True G16211
TU20094 lncRNA upstream 547413 32261711 ~ 32262672 (+) True G16169
TU20089 lncRNA upstream 556856 32251814 ~ 32253229 (+) False AMCG00016841
TU19924 lncRNA upstream 1054658 31755042 ~ 31755427 (+) True G16037
TU19869 lncRNA upstream 1165570 31615220 ~ 31644515 (+) True G15995
TU20241 lncRNA downstream 1250 32857551 ~ 32859016 (+) True G16290
TU20283 lncRNA downstream 125478 32981779 ~ 32982330 (+) True G16323
TU20320 lncRNA downstream 323404 33179705 ~ 33179940 (+) True G16350
TU20321 lncRNA downstream 323938 33180239 ~ 33180439 (+) True G16351
TU20374 lncRNA downstream 468793 33325094 ~ 33328342 (+) True G16395
AMCG00016863 mRNA upstream 32613 32773075 ~ 32777472 (+) True AMCG00016863
AMCG00016861 mRNA upstream 202703 32590767 ~ 32607382 (+) True AMCG00016861
AMCG00016854 mRNA upstream 306713 32499691 ~ 32503372 (+) False AMCG00016854
AMCG00016855 mRNA upstream 311577 32497882 ~ 32498508 (+) True AMCG00016855
AMCG00016853 mRNA upstream 314338 32489913 ~ 32495747 (+) True AMCG00016853
AMCG00016866 mRNA downstream 39458 32895759 ~ 32921227 (+) True AMCG00016866
AMCG00016872 mRNA downstream 130279 32986580 ~ 32989958 (+) True AMCG00016872
AMCG00016873 mRNA downstream 156617 33012918 ~ 33021870 (+) True AMCG00016873
AMCG00016875 mRNA downstream 179001 33035302 ~ 33109567 (+) True AMCG00016875
AMCG00016874 mRNA downstream 292190 33148491 ~ 33151617 (+) True AMCG00016874
TU20166 other upstream 306829 32499056 ~ 32503256 (+) True AMCG00016854
TU20164 other upstream 306829 32499576 ~ 32503256 (+) False AMCG00016854
TU20165 other upstream 306829 32500796 ~ 32503256 (+) False AMCG00016854
TU19916 other upstream 1075769 31728556 ~ 31734316 (+) False AMCG00016830
TU19913 other upstream 1083068 31721939 ~ 31727017 (+) True AMCG00016829
TU20240 other downstream 60 32856361 ~ 32857440 (+) True G16289
TU20517 other downstream 812328 33668629 ~ 33672620 (+) True AMCG00016901
TU20550 other downstream 1191070 34047371 ~ 34047720 (+) True G16546
TU20555 other downstream 1244014 34100315 ~ 34100863 (+) True G16550
TU21320 other downstream 5639750 38496051 ~ 38503632 (+) True G17193

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049914 False 10480 mRNA 0.47 28 NC_007114.7 22578369 ~ 22817455 (+)
grasscarp (Ctenopharyngodon idella) CI01000047_04613815_04652751.mRNA True 5046 mRNA 0.55 21 CI01000047 4613815 ~ 4652751 (-)